 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
evm.model.supercontig_7.134 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
| Family |
MYB_related |
| Protein Properties |
Length: 479aa MW: 53099.3 Da PI: 8.1296 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_7.134 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 53.1 | 7.5e-17 | 81 | 125 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
r +WT eE++++++a k++G g W+ I +++g ++t+ q++s+ qk+
evm.model.supercontig_7.134 81 REKWTDEEHQRFLEALKLYGRG-WRQIEEHVG-TKTAVQIRSHAQKF 125
789*******************.*********.************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 479 aa
Download sequence Send
to blast |
MSLFNSFTEE SEISTRAYST ICSQSAQKHG EEKMSETANS TTCSFSTIAD SETVVQVNRL 60
GSFNNGSTPK ARKPYTITKQ REKWTDEEHQ RFLEALKLYG RGWRQIEEHV GTKTAVQIRS 120
HAQKFFSKVV KESCSESSIK PIDIPPPRPK RKPVHPYPRK SSVSLKGRAI QAERIVSPNL 180
LASGKETQSP TSVLSAVSEQ RNECSSPSCT SDMHSSSFLS IDKENEYVTS SLSPEQEKIS 240
STKLDSCSKI PSSSLGDAAA AASYMHIKLF GKTVLVTDAQ KSSPGVKNNK FPTSQTHEEN 300
LDTDNINLIQ TFQSKQLDTH LSLGTGAVNK NMNWLPAERP VVHFMDCDGE RTFVEATADS 360
PLESITQYQA LPSFSLTLSN QMHLHSPVSF CGDENFKEKR NLNGKSCANS VAGLENREKN 420
SESDSQCIKP HSRNCSKGFV PYKRCFTERD MKSCVMGSEE QDGQRARMTL EKAWNSLS*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in phytochrome A-mediated cotyledon opening. Controlled by the central oscillator mediated by LHY and CCA1. Part of a regulatory circadian feedback loop. Regulates its own expression. {ECO:0000269|PubMed:14523250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by red light and far red light. {ECO:0000269|PubMed:14523250, ECO:0000269|PubMed:19805390}. |
