PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_7.131
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 434aa    MW: 48949.2 Da    PI: 9.1643
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_7.131genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65e-065173123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                 y+C++C++ F r  nL+ H r+H
  evm.model.supercontig_7.131 51 YVCEICNQGFQRDQNLQMHRRRH 73
                                 9*********************9 PP
2zf-C2H218.26.9e-06128150123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                  ++C++C+k +  +s++k H++t+
  evm.model.supercontig_7.131 128 WVCHKCSKAYAVQSDFKAHLKTC 150
                                  58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.35E-54874No hitNo description
Gene3DG3DSA:3.30.160.601.7E-55073IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.975173IPR007087Zinc finger, C2H2
SMARTSM003550.00525173IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
SMARTSM0035521092122IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.8E-4119149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035555128155IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MFPSNPSDPF SCLETGTNSN NKRKRRPAGT PDPDAEVVSL SPKTLMESDR YVCEICNQGF  60
QRDQNLQMHR RRHKVPWKLL KRETPSVRKR VFVCPEPSCL HHDPCHALGD LVGIKKHFRR  120
KHSNHKQWVC HKCSKAYAVQ SDFKAHLKTC GTRGHSCDCG RVFSRVESFI EHQDACNMGR  180
VRPETQPKQQ PPETPCLSRS TSSTPTPSSD TNFSTTPAGN GSTMVVPTNP AITDSMFLIS  240
KEDNHSKNKY NLELQLSTTT SNPLDRVSAV SSKIYDNHST HLQLSIGSCE FLGGNQRNEY  300
SSCEKPASRE LKDEAREQLR LAMAEKAYAE QARQEAKKQI ELAEQEFASA KKIRQRAQAE  360
LNKAQVLKDH AIKKINSNIL QITCQSCKRH FQATNPFTHH NSLVSMSYFS PAILSQSELE  420
ITACRHQINL HQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-17124177356Zinc finger protein JACKDAW
5b3h_F3e-17124177356Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_7.131
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021907668.10.0protein SHOOT GRAVITROPISM 5-like
SwissprotF4IPE31e-143IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A061GQZ70.0A0A061GQZ7_THECC; C2H2-like zinc finger protein
STRINGevm.model.supercontig_7.1310.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-126indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]