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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_7.129 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | AP2 | ||||||||
Protein Properties | Length: 541aa MW: 61076.2 Da PI: 7.0384 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 25.5 | 3.2e-08 | 90 | 142 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++k +gr++ ++d s+ n+ k g f + Aa+a++ a++kl++ evm.model.supercontig_7.129 90 SIYRGVTRNKVTGRFETFLWDNSNtNN--KGKT-GGFTDEIAAARAYDLAALKLWK 142 57*******************777565..6655.4466669************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.9E-5 | 90 | 142 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.89E-10 | 90 | 151 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 14.052 | 91 | 150 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.5E-9 | 91 | 156 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.4E-10 | 91 | 151 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-5 | 164 | 189 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 541 aa Download sequence Send to blast |
MDDDNQNVHI VDSESPNNII EQQKEEIRIM DDDNQTVHAV DNESSKNIII EQKEEIRQND 60 VGNQSRDEDP NGSSKKRAIR SERISGTKSS IYRGVTRNKV TGRFETFLWD NSNTNNKGKT 120 GGFTDEIAAA RAYDLAALKL WKKEESLNFP SSDYKEDMEE MKDSQEEAAR AYDIASIRLR 180 GHKAMTNYDL NRYDIQGILQ CPMLPISKGA SKLLINSTVE EILCKKRNSK KLEVKNLEDK 240 IPEDGDQSSN GRPFNGDPNL RLFGCGNSFP GECSTMPVNN QINRHYPDSS LSQNHGFSSS 300 QAHQKRPSYD GRDPDRHFFT HGFSLKPGFL HKLSGTERNA YQENAKSSHQ NPFPSSPTSN 360 NGLHSSTARF DGNAIFGNPI KNFDLQNPTS FPGSSSSRVD GTEFSRNSNN NLDFQKQILF 420 HDFSIPKVIK NEFSENPNKY SGFQENLYLL NNFSSHKVNR NRFFKNPNST YHEDSSTKAE 480 MNFQQMCNGN LTEKGKSIVR NFPFKKLKVE VSTDLDDEMK LLQGGLDPNS KQPNSSSSNK 540 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_7.129 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021907742.1 | 1e-102 | AP2-like ethylene-responsive transcription factor PLT1 | ||||
STRING | evm.model.supercontig_7.129 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17569 | 6 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17430.1 | 3e-19 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_7.129 |