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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
evm.model.supercontig_69.72 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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| Family |
YABBY |
| Protein Properties |
Length: 190aa MW: 21147.7 Da PI: 8.0596 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_69.72 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 156.4 | 2.4e-48 | 1 | 143 | 23 | 169 |
YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakas.....qllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99
+vsvP +sl++ vtvrCG+Ctsllsvn++k+s lla+ s+ d ++++e + k + ++ ++s s+
evm.model.supercontig_69.72 1 MVSVPCSSLSTAVTVRCGCCTSLLSVNMMKSSfvplhLLLASLSR-DG---------EGKKEASPKDGDGCRRLDRQSPSML 72
59**************************99884443222233332.22.........2222222222222222222222222 PP
YABBY 100 klsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169
+ s+ e+e+ ++ + v++PPekrqr+Psayn+fikeei+r+ka+nP+++h+eafs+aaknWa fP+ h+
evm.model.supercontig_69.72 73 TSSDYEEEDGIHINQiVNKPPEKRQRAPSAYNCFIKEEIRRLKAHNPNMTHKEAFSTAAKNWAQFPPTHYR 143
22444555555666659****************************************************86 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 190 aa
Download sequence Send
to blast |
MVSVPCSSLS TAVTVRCGCC TSLLSVNMMK SSFVPLHLLL ASLSRDGEGK KEASPKDGDG 60
CRRLDRQSPS MLTSSDYEEE DGIHINQIVN KPPEKRQRAP SAYNCFIKEE IRRLKAHNPN 120
MTHKEAFSTA AKNWAQFPPT HYRKDVECGE NQDPSETTWN SDALEGSTAG FRERKAPRNS 180
IWARTPFDQ*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
| Publications
? help Back to Top |
- Lora J,Hormaza JI,Herrero M
Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
New Phytol., 2015. 208(2): p. 584-95
[PMID:25991552] - Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
BMC Plant Biol., 2016. 16(1): p. 143
[PMID:27350128] - Simon MK,Skinner DJ,Gallagher TL,Gasser CS
Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors.
Genetics, 2017. 207(4): p. 1489-1500
[PMID:28971961]
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