PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_69.52
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 667aa    MW: 75228.7 Da    PI: 8.7982
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_69.52genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.3e-11472515755
                                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                    Er+RR+ri+++++ Lr ++Pk +      K++ a+i   A+eYI +Lq
  evm.model.supercontig_69.52 472 VTERNRRNRIKDGLFALRAIVPKiS------KMDRAAIIGDAIEYIGELQ 515
                                  57*********************66......****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-14461527IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.62E-10463519No hitNo description
PROSITE profilePS5088813.503465514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11471520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-15472535IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-9473515IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MSSQPQQQGQ QPLLVYPNTV TRPPPSSLLS SSSSHSNGSF GTVFIVLAVI VVISAIACFL  60
GRLCNRRSHK NQHKQQQQQQ KKPPKQTQNF PHKEWEPRQN RDLEFGLEKK INPVPRQAAG  120
GKNNRDLEFG FDHKRIPSGK PGVRINGDPR GFKVQENGEI RGEFRHVKIQ LECRIVYTSL  180
VLHSLITHLL WETQTYFCDI QGDMRSMKIA VEWLRPCIEN LAWDYCVVWK LGDEHSRFIE  240
WVGCCCSGGA RVKVERGKQE LVGLCRDERD NNRVESLRLY CLVTGSGYSW ETTGTRVLIP  300
VLGGLIELFA AKNTPKDVKI IELITSLYDA SSEQEMTAQS YMTLGEDLDP PAEANLQNLQ  360
PVLRLPTLIP KTQVLTQVTQ SHIYPSFDGS SSSSHPPSKQ GSFDSNPCYG SQNEPLKESV  420
GKFFGFKRSR NGDILIKQQA GVALNCNVKV ARGNSKAIRQ PGSETYQSKN LVTERNRRNR  480
IKDGLFALRA IVPKISKMDR AAIIGDAIEY IGELQKEIKR LQDELKKIED EEHKLNNTDM  540
KVTKSDRVQE DTELASDQIQ SCSGSYEKRN RNTEMHVEVN RIGEREFLIK FLQEHKRGGF  600
GKLMDALQSL DLFVVNANIT TYGGNVLNIL QVEHDAVHFR FSLGLKELVG FSIPYQVSVD  660
SAFLFI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_69.52
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021895842.10.0transcription factor bHLH90 isoform X1
STRINGevm.model.supercontig_69.520.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69852742
Representative plantOGRP37041323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.12e-57bHLH family protein