PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_66.17
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ZF-HD
Protein Properties Length: 317aa    MW: 35552.3 Da    PI: 8.0081
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_66.17genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.81.9e-3148100457
                  ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                                  v++keC++NhAas+Ggha DGCgEfmp  g +gt ++l+CaACgCHRnFHRre 
  evm.model.supercontig_66.17  48 VKFKECMRNHAASIGGHANDGCGEFMPR-GLDGTRESLTCAACGCHRNFHRREI 100
                                  79*************************8.999********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.3E-2948100IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-1948102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015669.6E-2849100IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.0835099IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE patternPS00028086109IPR007087Zinc finger, C2H2
SuperFamilySSF466894.61E-18210283IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-29214283IPR009057Homeodomain-like
TIGRFAMsTIGR015654.6E-26223279IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MDLSVVPYTQ HTSSDTDHDS PGDAIEVEHK PSAADSRSTD FKKSPPPVKF KECMRNHAAS  60
IGGHANDGCG EFMPRGLDGT RESLTCAACG CHRNFHRREI PGAHFVHHHP PPPSQMVVYN  120
AGPTTPRWDK NVMNNNSTTT LPLFQPRNMS TRRYQYNRNN GDHHHHHHHH LMGAVDEGDH  180
QDQDHEDNAE AYDRRSETPE RGDGNVTPGG GTGRTAAMMM RSKRFRTKFT QEQKDRMLEF  240
AERIGWRIQR NDDGVLNQFC NEVGVKRNVL KVWMHNNKNA HRRRELSLQS PMSGGAAADT  300
PPAPPQQSHP PQPIGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-252222801775ZF-HD homeobox family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_66.17
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN0884950.0JN088495.1 Vasconcellea monoica clone BAC-MN13O12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021896062.10.0zinc-finger homeodomain protein 6-like
TrEMBLA0A2P5EHM81e-77A0A2P5EHM8_TREOI; Octamer-binding transcription factor
STRINGevm.model.supercontig_66.170.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2110333
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.22e-50homeobox protein 31