PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_65.63
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 327aa    MW: 35500.8 Da    PI: 6.3897
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_65.63genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-13139184454
                                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   hn+ ErrRRdri+ ++  L+el+P++      Kl+ a++L  A++Y+k L
  evm.model.supercontig_65.63 139 LHNISERRRRDRIKGKMRALQELIPNC-----NKLDRASMLDDAINYLKAL 184
                                  5*************************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.1E-17132192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-18133194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.009135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.87E-15140189No hitNo description
PfamPF000101.5E-10140184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-15141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MSQQAPFCEI RASSGDEVDG SSSNHGDGSI FPVSASPELN PLSQIFSSFT YCGAEADCFQ  60
DVWGSLPDYQ LDSTAQNVLD NMPARDSGCE VNEGDSAGRK RGFDETGYRR CSSEEPNEVS  120
RESKRRLNER PKRTRSAELH NISERRRRDR IKGKMRALQE LIPNCNKLDR ASMLDDAINY  180
LKALKLQVEM LSTGGGTPCQ FLHMSPAGIQ SMQFPQFSPF VPLRQGLGLG MGLGFGTGML  240
GACFSTNLHP SLLATATRLP LISGCGEFPF SHMQNPFFHS QTLPEAAASS SSLQAFLAGF  300
SPALNCSNKG DFVCQSEATG SINYKH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143148ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_65.63
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021896315.10.0transcription factor SPATULA
STRINGevm.model.supercontig_65.630.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2193445
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.24e-22phytochrome interacting factor 3