PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_65.44 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | bHLH | ||||||||
Protein Properties | Length: 253aa MW: 28097 Da PI: 7.9267 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.1 | 3.1e-08 | 140 | 187 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + k + a +L ++Y++sLq evm.model.supercontig_65.44 140 SHSLAERVRREKINERLRCLQDLVPGC----YKTMGMAVMLDVIINYVQSLQ 187 8*************************8....355888888888888888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.05E-10 | 134 | 191 | No hit | No description |
SuperFamily | SSF47459 | 9.03E-17 | 134 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.6E-16 | 136 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.358 | 136 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-5 | 140 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.8E-8 | 142 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:2000488 | Biological Process | positive regulation of brassinosteroid biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MADQFSELEF QTFKHCFKDT LNQTVLEEVT GSTHHHLRGS SMSFSHSTFL HSQLAQPTMT 60 FTGGFGEERK NGKEAMGGVG QNLLLVNLCP PPGSATGLFT GNDSKGNSQG RKRKKKSEMD 120 LQKPKEVIHV RAKRGQATDS HSLAERVRRE KINERLRCLQ DLVPGCYKTM GMAVMLDVII 180 NYVQSLQNQI EFLSMKLSAA SMYCDFNMME MDSMETILQG ASTYGLQEME KMMKEGYGGG 240 GGSSYLNSTW SF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 114 | RKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_65.44 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021896289.1 | 1e-157 | transcription factor bHLH75 | ||||
TrEMBL | A0A067GNR6 | 5e-78 | A0A067GNR6_CITSI; Uncharacterized protein | ||||
STRING | evm.model.supercontig_65.44 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14081 | 20 | 24 | Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25330.1 | 6e-53 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_65.44 |