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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_62.76 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | B3 | ||||||||
Protein Properties | Length: 328aa MW: 37754.1 Da PI: 8.9125 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.4 | 1.1e-12 | 5 | 72 | 1 | 72 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 ff +l+ s++ +++rl++p +f+++++ + s+ + l+ ++g +W+v l rk s+++++++GW+eF ++ evm.model.supercontig_62.76 5 FFHKLILSSTIQEKRLRIPDNFVKKFKDE--LSVAVALTVPDGHVWRVGL--RKVSDKIWFQDGWQEFSSDM 72 8899999****************999855..99*****************..****************9885 PP | |||||||
2 | B3 | 63.9 | 2.6e-20 | 232 | 322 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 vl ps+ + ++++lp fae+h +g+ s ++l++++g++W v++ yr+++ +++GW eF +n+L egD++vF+l evm.model.supercontig_62.76 232 VLRPSYLYRGCIMYLPSCFAEKHlSGI---SGFIKLQSSDGKQWPVRCLYRGGR--AKFSQGWYEFTLENNLGEGDVCVFEL 308 78899******************7555...346***************666665..5699********************** PP -SSSEE..EEEEE- CS B3 85 dgrsefelvvkvfr 98 + ++f l+v+vfr evm.model.supercontig_62.76 309 LRARDFILKVTVFR 322 999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.0E-13 | 3 | 71 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.16E-13 | 3 | 72 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.34E-11 | 5 | 71 | No hit | No description |
Pfam | PF02362 | 5.4E-10 | 5 | 72 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.53 | 5 | 100 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0051 | 6 | 90 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.5E-25 | 221 | 322 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.09E-25 | 222 | 322 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.74E-23 | 227 | 322 | No hit | No description |
PROSITE profile | PS50863 | 13.606 | 229 | 324 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-19 | 229 | 324 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-18 | 232 | 322 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MPRPFFHKLI LSSTIQEKRL RIPDNFVKKF KDELSVAVAL TVPDGHVWRV GLRKVSDKIW 60 FQDGWQEFSS DMKGILLSVF TYLIYLFSEI NYHVNGLVGG NEAHNHFKRN RIFEELEDED 120 AEIVGSSSMC PYPAYPDSLA LNKSYNTAAL QNLFSGPKEE DVQKPKKRGR KKQRIDPNDH 180 NPSGQHEDEV DMRFRFYESA SARKRTVTAE ERERAINAAK AFEPTNPFCR VVLRPSYLYR 240 GCIMYLPSCF AEKHLSGISG FIKLQSSDGK QWPVRCLYRG GRAKFSQGWY EFTLENNLGE 300 GDVCVFELLR ARDFILKVTV FRVLESV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 7e-79 | 195 | 327 | 15 | 146 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 7e-79 | 195 | 327 | 15 | 146 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 167 | 173 | RGRKKQR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_62.76 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021896598.1 | 0.0 | LOW QUALITY PROTEIN: B3 domain-containing transcription factor VRN1-like | ||||
Swissprot | Q8L3W1 | 1e-163 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | E4MXM2 | 1e-160 | E4MXM2_EUTHA; mRNA, clone: RTFL01-34-E14 | ||||
TrEMBL | V4M6R9 | 1e-160 | V4M6R9_EUTSA; Uncharacterized protein | ||||
STRING | evm.model.supercontig_62.76 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1124 | 28 | 103 | Representative plant | OGRP2051 | 14 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-157 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_62.76 |
Publications ? help Back to Top | |||
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