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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_62.63 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | ERF | ||||||||
Protein Properties | Length: 257aa MW: 27442.6 Da PI: 8.8632 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.6 | 3.5e-19 | 24 | 73 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r +lg+f+taeeAa+a+++a+++l+g evm.model.supercontig_62.63 24 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEEAARAYDNAARALRG 73 689******.7*********....4456*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.79E-20 | 24 | 81 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.6E-29 | 24 | 81 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-13 | 24 | 73 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-35 | 24 | 87 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.24E-29 | 24 | 81 | No hit | No description |
PROSITE profile | PS51032 | 20.653 | 24 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-8 | 25 | 36 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-8 | 47 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MAAPTTDVAG KKKKKKASSR GHNRFVGVRQ RPSGRWVAEI KDSLQKVRLW LGTFDTAEEA 60 ARAYDNAARA LRGVNARTNF ESPPQSAPTA KQNGSTLAGR LAVEKMEPFS FEAVCGGSAS 120 DGFLGALKAK LLDGKGSRVR ALLAASFQFP PLFSPPPNPT DPVVDRTGFG QWHDPPPQAA 180 PAKTSVIWSN EQLVDWGTNG ASTQMNYHGS DQNNCSFAST WPASVSEIRG VWPLDQPQFV 240 GCDEEDGVWG TGGDAI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-15 | 22 | 80 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_62.63 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021896631.1 | 0.0 | ethylene-responsive transcription factor 11-like | ||||
TrEMBL | A0A061G1T0 | 1e-49 | A0A061G1T0_THECC; AP2/ERF domain-containing transcription factor, putative | ||||
STRING | evm.model.supercontig_62.63 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15994 | 8 | 13 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 4e-18 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_62.63 |