PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_62.51
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family G2-like
Protein Properties Length: 407aa    MW: 45344.9 Da    PI: 9.3219
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_62.51genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.56.2e-33262317156
                      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                                  k+r++W+peLH+rFv+a++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+
  evm.model.supercontig_62.51 262 KQRRCWSPELHRRFVNALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 317
                                  79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.318259319IPR017930Myb domain
SuperFamilySSF466892.39E-18259320IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-30259320IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-27262317IPR006447Myb domain, plants
PfamPF002496.4E-8264315IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGSIPPELSL DFRPSSFVPK TISDFLKEVS RIGSVSEKVS KLDGFVKGLE EEMRKIDAFK  60
RELPLCMLLL KDAIIALKEE SMRYAAKNAL PVLEEFIPLK KRDRDEEDEE DRAAARKKED  120
CRDKKNWMSS VQLWNSEDLP SSTVNHRSFD PKQNHKLETK KKDGQNQCAN VDLLFQTARN  180
RASARTIMPF KGFSGFPGRK EDKEELPVQG LSLSTPGIKS LRDELNSGSR TSCSQAVSSS  240
ATISQSNFRS GPQPPHQQTS RKQRRCWSPE LHRRFVNALQ QLGGSQVATP KQIRELMQVD  300
GLTNDEVKSH LQKYRLHTRR VPPTNATSTT NSSAMMLGGL WVSQDQYVDS SKPSNSQSGS  360
PQGPLQLTYT GGTSTTGGDS MEDDGDAKSE SYSWKGHIHK PGKDDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-13262315255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-13262315255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-13262315154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-13262315154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-13262315154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-13262315154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-13262315255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-13262315255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-13262315255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-13262315255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-13262315255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-13262315255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_62.51
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021896708.10.0transcription factor HHO6 isoform X1
TrEMBLA0A067L2E90.0A0A067L2E9_JATCU; Uncharacterized protein
STRINGevm.model.supercontig_62.510.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145351021
Representative plantOGRP25631133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.13e-54G2-like family protein