PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_62.160
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 411aa    MW: 45361.5 Da    PI: 6.9616
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_62.160genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.4e-10243290455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +h+ +Er RR++i +++  L++l+P +    ++   Ka +L + ++Y++sLq
  evm.model.supercontig_62.160 243 SHSLAERVRREKISERMKYLQDLVPGC----NRITGKAGMLDEIINYVQSLQ 290
                                   8**************************....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.15E-16237308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.90E-10237294No hitNo description
Gene3DG3DSA:4.10.280.102.8E-17239306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.605239289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-7243290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-9245295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MNRGGLLPQM LHCTDMTVLE RQRARLKWQQ DQLQPDQQQQ ESRFSDFNGL FSMPAQATQV  60
QNFQGGVLAA HDPALADVVT RSVKPDPALL TGWTDLGKTV ELRAGMEFLG PCAYSNYSGL  120
EMNYSISRTS SCPPAVAAAV AMEAVEAKPK GSILSEKVSA TTGRDSFKKR KVDKMLNAKI  180
AAEDEGKEKK MKACAEEGDS KVTEQSNKKE KCGDTCKENS KACEGQKPDY IHVRARRGQA  240
TDSHSLAERV RREKISERMK YLQDLVPGCN RITGKAGMLD EIINYVQSLQ RQVEFLSMKL  300
AAVNPRLDFN IDNLFAKEAC TSNFSTLGYV DFNPCGVEMG MNPGADMGLR RTISAPVETF  360
LDSSCFTQIP STWDVELQNV YNNITFDHQI SFPPQPFTGS IEGSNLKIGI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_62.160
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021896584.10.0transcription factor bHLH63-like isoform X2
TrEMBLA0A061DZ541e-159A0A061DZ54_THECC; Cryptochrome-interacting basic-helix-loop-helix 1, putative isoform 1
STRINGevm.model.supercontig_62.1600.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59472543
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.12e-61cryptochrome-interacting basic-helix-loop-helix 1