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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_6.72 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 98aa MW: 11080.8 Da PI: 9.9642 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 61.6 | 9.2e-20 | 12 | 55 | 4 | 47 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 +nk n+++tfs R+n + KKA+ELS+LC+++ a+i f +tgkl evm.model.supercontig_6.72 12 KNKANKSITFSHRKNSLVKKAYELSTLCEIDLALIFFTPTGKLS 55 79****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.1E-17 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 19.82 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.37E-22 | 2 | 84 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-14 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-17 | 12 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-14 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-14 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MGRPKTKLGE GKNKANKSIT FSHRKNSLVK KAYELSTLCE IDLALIFFTP TGKLSLFDGK 60 SSVEETLERY LNLPPPCRER YAVHFEGGEM RLNYIKQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_6.72 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021908260.1 | 4e-51 | serum factor response D-like | ||||
Swissprot | Q9LM46 | 1e-22 | AG104_ARATH; Agamous-like MADS-box protein AGL104 | ||||
TrEMBL | A0A022QCZ8 | 2e-24 | A0A022QCZ8_ERYGU; Uncharacterized protein | ||||
STRING | evm.model.supercontig_6.72 | 6e-66 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77950.2 | 4e-26 | AGAMOUS-like 67 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_6.72 |
Publications ? help Back to Top | |||
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