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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
evm.model.supercontig_6.40 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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| Family |
LBD |
| Protein Properties |
Length: 240aa MW: 25789.3 Da PI: 8.2627 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_6.40 | genome | ASGPB | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 100.7 | 1.4e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78
+C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg
evm.model.supercontig_6.40 2 SCNGCRVLRKGCSESCILRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPETQRPALFQSLLFEACGRTVNPVNGAVG 84
6********************************************************************************** PP
DUF260 79 vilklqqqleqlkaelall 97
++++++++++q+++e++l+
evm.model.supercontig_6.40 85 LLWTGNWHICQAAVETVLR 103
*************998876 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 240 aa
Download sequence Send
to blast |
MSCNGCRVLR KGCSESCILR PCLQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPETQR 60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHICQAAVET VLRGGTLRPV PELLSGGSGG 120
LSPLADEASE SCTDMWMLRS STNQNPTCRF SNSRSKVSPT KRKRSPEEPK KLPLQLSDLD 180
LGLTSSFPAN SAAYKPETRR PGTPSMNSEE SVTTSCWDSG LGDQYANGGG QTRLLNLFL*
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