PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_6.397
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family G2-like
Protein Properties Length: 372aa    MW: 41361.2 Da    PI: 7.1365
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_6.397genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.99.9e-33236291156
                      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                                  k+r++W+peLH+rFvea+++LGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+
  evm.model.supercontig_6.397 236 KQRRCWSPELHRRFVEALQKLGGSKVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 291
                                  79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.553233293IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-29233294IPR009057Homeodomain-like
SuperFamilySSF466899.36E-19234294IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-27236291IPR006447Myb domain, plants
PfamPF002491.6E-8238289IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010092Biological Processspecification of organ identity
GO:0010629Biological Processnegative regulation of gene expression
GO:0048449Biological Processfloral organ formation
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDLSLDLSLV YVPKTMSEFM RDISKTKNIS AKVSKIDDFV KRLEDERRKI DAFRRELPLC  60
MLLLTDVIAR LEEEKVQYAE LNDRSAVEEI LPLKRISEED GAANRERDGC DKKNWMSSVQ  120
LWSNNVNPDP EQHSISRLKS TSEDDGSFAE EHPVQPSNHS SRGGAIGPFK GKSGFQEKGV  180
PSLSLMTPIS ELSSCTTVSA SIMSCRVGFG SSLCADQNPV ELQSKPQHQQ QQNSRKQRRC  240
WSPELHRRFV EALQKLGGSK VATPKQIREL MQVDGLTNDE VKSHLQKYRL HIRKVPASSS  300
AAATSHWSAG NHSGDSSKPS ISPSGSPQGP LLSHGADSNG ADSMETEEDE KSDGRSWRGR  360
IHRPEEIHVY N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-14236289255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-14236289255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-14236289154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-14236289154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-14236289154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-14236289154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-14236289255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-14236289255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-14236289255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-14236289255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-14236289255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-14236289255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00629PBMTransfer from PK14402.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_6.397
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021908204.10.0transcription factor HHO5
TrEMBLA0A0D2PQG91e-133A0A0D2PQG9_GOSRA; Uncharacterized protein
STRINGevm.model.supercontig_6.3970.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49222652
Representative plantOGRP25631133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.17e-60G2-like family protein