PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_6.354
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 345aa    MW: 37501.8 Da    PI: 5.9141
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_6.354genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.9e-08957247
                                 SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
              Myb_DNA-binding  2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47
                                 g+W  eEd+++ +av+++ ++     + +Ia +++ gR+ ++++++++ +
  evm.model.supercontig_6.354  9 GKWVWEEDKKFENAVALFANDppseMFVKIAGEFP-GRSVEEIQDHFFVL 57
                                 89*********************************.**********9865 PP
2Myb_DNA-binding47.73.6e-15108152347
                                  SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
              Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                  +WT+eE+ +++++ +++G g+W++I+r+  + +t+ q+ s+ qky
  evm.model.supercontig_6.354 108 PWTPEEHNRFLEGLEKYGRGDWRSISRHCVLSKTPTQVASHAQKY 152
                                  8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.646358IPR017877Myb-like domain
SuperFamilySSF466896.13E-7769IPR009057Homeodomain-like
SMARTSM007170.002760IPR001005SANT/Myb domain
PfamPF002491.4E-6956IPR001005SANT/Myb domain
CDDcd001674.87E-61058No hitNo description
PROSITE profilePS5129418.477101157IPR017930Myb domain
SuperFamilySSF466898.22E-17103158IPR009057Homeodomain-like
TIGRFAMsTIGR015575.7E-17104155IPR006447Myb domain, plants
SMARTSM007175.6E-11105155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-11107153IPR009057Homeodomain-like
PfamPF002493.2E-12108152IPR001005SANT/Myb domain
CDDcd001673.75E-11108153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEHGGDNHGK WVWEEDKKFE NAVALFANDP PSEMFVKIAG EFPGRSVEEI QDHFFVLIQD  60
VENIDSGDVP LPPYADDNVE GEGNPGDRGK APIRDISYQP QKANRGVPWT PEEHNRFLEG  120
LEKYGRGDWR SISRHCVLSK TPTQVASHAQ KYFSKLQRAE AAKNNPKPPK SKKAGASKRT  180
GAAPAEPIPI SPDSAQPQPI AASNPMALVP SVPFMGTLVE HQRYNQLLSA ASVGGMPYGP  240
FSDHHHASMV AGSMPHEVFS HNQFPTDYHH HHASMGDPDY GLSELALAVS SMITPTVPPP  300
FDPISQLTVP PPPPPPPPSS QDYGDNPMVD PSYGAGFSHQ FPPP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_6.354
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021908352.10.0transcription factor MYBS1-like
STRINGevm.model.supercontig_6.3540.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2062545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.16e-38MYB family protein