PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_6.219 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | DBB | ||||||||
Protein Properties | Length: 104aa MW: 11361.2 Da PI: 6.4729 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.2 | 6.8e-08 | 4 | 33 | 5 | 34 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++ fC ++ lC+ C ++ H evm.model.supercontig_6.219 4 LCDACESAAAIVFCAADEAALCRACDEKVH 33 7**************************998 PP | |||||||
2 | zf-B_box | 28.3 | 3.6e-09 | 52 | 91 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 + ++C+ +e+ ++ ++Ce +++ lC +C + H g H evm.model.supercontig_6.219 52 DVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 91 6799**************************9996555556 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 4.4E-8 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.239 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.73E-5 | 3 | 45 | No hit | No description |
Pfam | PF00643 | 2.3E-6 | 3 | 42 | IPR000315 | B-box-type zinc finger |
SuperFamily | SSF57845 | 9.16E-5 | 50 | 86 | No hit | No description |
SMART | SM00336 | 9.9E-11 | 51 | 96 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.902 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.9E-7 | 52 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.75E-5 | 54 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence Send to blast |
MRTLCDACES AAAIVFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLADP NDVPRCDICE 60 NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLLLRQR VEV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_6.219 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021908309.1 | 2e-69 | B-box zinc finger protein 19-like | ||||
Refseq | XP_022775398.1 | 4e-69 | B-box zinc finger protein 18-like isoform X1 | ||||
Swissprot | C0SVM5 | 1e-63 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | D7U5G9 | 7e-67 | D7U5G9_VITVI; Uncharacterized protein | ||||
STRING | evm.model.supercontig_6.219 | 1e-69 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2168 | 24 | 69 | Representative plant | OGRP3352 | 16 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 5e-66 | DBB family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_6.219 |