![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.supercontig_6.213 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 1074aa MW: 118642 Da PI: 5.8732 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.2 | 1e-06 | 1050 | 1073 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ f+++G+Ck+G++C++ H+ evm.model.supercontig_6.213 1050 GQRVCK-FYESGYCKRGASCSYWHP 1073 6799**.8899***********997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 8.43E-8 | 103 | 172 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 1.5E-8 | 124 | 174 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SMART | SM00249 | 0.0038 | 130 | 175 | IPR001965 | Zinc finger, PHD-type |
CDD | cd15568 | 5.52E-16 | 130 | 172 | No hit | No description |
SuperFamily | SSF47592 | 2.83E-19 | 323 | 401 | IPR003121 | SWIB/MDM2 domain |
Gene3D | G3DSA:1.10.245.10 | 2.6E-23 | 324 | 406 | IPR003121 | SWIB/MDM2 domain |
Pfam | PF02201 | 9.1E-15 | 335 | 400 | IPR003121 | SWIB/MDM2 domain |
SMART | SM00151 | 0.0016 | 344 | 405 | IPR019835 | SWIB domain |
SMART | SM00719 | 1.4E-50 | 461 | 571 | IPR004343 | Plus-3 domain |
PROSITE profile | PS51360 | 28.372 | 461 | 594 | IPR004343 | Plus-3 domain |
SuperFamily | SSF159042 | 3.4E-33 | 462 | 591 | IPR004343 | Plus-3 domain |
Pfam | PF03126 | 1.0E-24 | 466 | 569 | IPR004343 | Plus-3 domain |
PROSITE profile | PS50103 | 14.455 | 1048 | 1073 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.67E-6 | 1048 | 1072 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-4 | 1050 | 1073 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.5E-4 | 1052 | 1072 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1074 aa Download sequence Send to blast |
MEQQHQQQEL ENKQEVEPAS GLYKPRLQEE SSVLEVDAMS IDQCETIREM DDSQLVGAPA 60 AANAGVTKTP GRGGGCLVDV EVKLKQEGET GPGVVETITG KRRRGRPPRG HPKTTPPPAP 120 PPRKKDEEDV CFICFDGGSL VLCDRRGCPK AYHPACIKRD DAFFRSKAKW NCGCVKDADY 180 LGVRGNKGFC GTCMRTIMLI ENAGQKDNET VQVDFDDTSS WEYLFKVYWL YLKGKLSLTL 240 EELTKAKNPW KGTAIMAPRV QYFSDPYGHN DHRGSCSDNT CADLIANHDK RRKTQIPTNL 300 NKMDSLSTED SGGDKGMDFP EDTKWATSEL LDFVAHVNNG NTSVLSKYDV QNLFLEYVKI 360 NNLRDPNQKC QIICDAKLAR LFGKERVGHF EMLKLIENHV LIPENSPAAN TDKVGVTGAV 420 PCQVEADGNN YIPVMGNDRK RKMRKRVDER GPLVNPHDYA AIDVHNINLI YLRRTLVENL 480 IDDEKKFHEK VVGSIVRIRI SGSDQKQDIY RLVQVVGTSK VAEPYKIGSR TTDVMLQILN 540 LDKKEVISID EISNQEFSED ECRRLRQSIK CGLIKRLTVG EIREKAVALQ AVKVNDWLEA 600 EILRLNHLRD RANEKGLRKE YPLIFTVFCL ECVEKLELLN SPEERERRLL DIPEVHCDLK 660 MNPSYESEDE LDGKKKGNHM RARGPDFSKK ENTPVSSRRG DSGISWSTAS SLVGGGTQIR 720 EVAGEWSTYS STPAKPSVEE WDPSLVAGSL KPPKVAVEHV ATPTSGCAQV THSSPPHPTS 780 NASDWPTIMT EANDCDESVS DLLAEVEAME SLNGLPSPTS ILRELTQGSD DDCFSPVEGL 840 SPAPDLGKND ALSSTNDFQM PSQSNVKDEP LVLSHINFLD RQKVSGGLSI TNSEVEEDKK 900 PIDLSINQCE AGSDIPPPAR PVTSWEVTPS VSSAWSVGSE PSGVSWSAVQ GNPNLSWAAL 960 VQATTNMSWE TGQGTTAQEN ASMSSGNATG NPAPWGSQLR YSSDRSSGSR DRDFLGRDSN 1020 FGKGRSLWNN RQSSYGAHGT GSVSKPPPKG QRVCKFYESG YCKRGASCSY WHP* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | evm.model.supercontig_6.213 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021908304.1 | 0.0 | LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 44 | ||||
Swissprot | Q9SD34 | 0.0 | C3H44_ARATH; Zinc finger CCCH domain-containing protein 44 | ||||
TrEMBL | A0A1Q3C6L8 | 0.0 | A0A1Q3C6L8_CEPFO; SWIB domain-containing protein/GYF domain-containing protein/Plus-3 domain-containing protein | ||||
STRING | evm.model.supercontig_6.213 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7787 | 21 | 30 |
Representative plant | OGRP1807 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G51120.1 | 0.0 | DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm.model.supercontig_6.213 |