PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_6.196
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family SRS
Protein Properties Length: 322aa    MW: 34569.9 Da    PI: 7.2219
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_6.196genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702204.82.5e-631042432154
                       DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelksk 81 
                                  +sg++sCqdCGnqakkdC h+RCRtCCksrgfdC+th+kstWvpa+krrerqqqlaa++++++++   +++++kr+re+   
  evm.model.supercontig_6.196 104 GSGGMSCQDCGNQAKKDCLHMRCRTCCKSRGFDCHTHIKSTWVPASKRRERQQQLAALQQQEEQQLqlRADNPKRQREN--- 182
                                  5789*****************************************************9888777663334444444432... PP

                       DUF702  82 kqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                                           l++   ++ +e+ ++P+evss+avfrcvrvs++dd++e+laYqtav+igGhvfkGiLyd+G e+
  evm.model.supercontig_6.196 183 ---------LTN---TSGSEVGNFPTEVSSPAVFRCVRVSGIDDSDEQLAYQTAVKIGGHVFKGILYDHGSES 243
                                  .........122...22456789***********************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.8E-65107242IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.3E-27109151IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.8E-26194240IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAGFFSLGGR GNQGEQNQNN PPTEIPPEAW FWYKNDEISS YKGFELWQQQ QQEFIHNRHN  60
PHQQQDLYSS AAGLGVGPSR SSINVSDESS SRSAFMMMRS GGGGSGGMSC QDCGNQAKKD  120
CLHMRCRTCC KSRGFDCHTH IKSTWVPASK RRERQQQLAA LQQQEEQQLQ LRADNPKRQR  180
ENLTNTSGSE VGNFPTEVSS PAVFRCVRVS GIDDSDEQLA YQTAVKIGGH VFKGILYDHG  240
SESGYMGGDH QSSSGGPQPL NLITAGPTTS SPTIGGASTS GGGGGAAGSS SSAAFLDPSS  300
LYPTPLNSFM AGTQFFPNPR S*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_6.196
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021907881.10.0protein SHI RELATED SEQUENCE 1 isoform X1
RefseqXP_021907882.10.0protein SHI RELATED SEQUENCE 1 isoform X1
SwissprotQ9SD401e-101SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBLA0A061DFV61e-145A0A061DFV6_THECC; Lateral root primordium protein-related, putative
STRINGevm.model.supercontig_6.1960.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34192864
Representative plantOGRP18721140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.11e-70Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]