PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_6.108
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GRAS
Protein Properties Length: 618aa    MW: 67530 Da    PI: 4.7888
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_6.108genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS368.11.2e-1122516173374
                         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                  ++Ll+cA+  +s +  +a + L  l+e +s +g+p++R+ +yfteAL++rl+    +  k+l+  ets    ++ + ++k++
  evm.model.supercontig_6.108 251 KALLDCARLAES-EPDRAVKSLICLRESVSDQGNPTERVGFYFTEALHSRLSL---QAEKSLTIVETS---CEDFTLSYKAL 325
                                  79******6555.77888888899****************************9...788888899888...89999****** PP

                         GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetge 163
                                  ++++P+ kf+hltaNqaIlea+e+++++Hi+Df+i qG+QW+aLlqaLa+R++g+p ++Ri g+ +p+ g     +l +tg+
  evm.model.supercontig_6.108 326 NDACPYAKFAHLTANQAILEATETASMIHIVDFGIVQGVQWAALLQALATRTAGKPaRIRISGIPAPALGksPGSSLLATGN 407
                                  ****************************************************66555*********9999889999****** PP

                         GRAS 164 rLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe 245
                                  rL++fA+ l+++fef++ + + +++l+  ++rv+p+E+laVn++lql++llde+++  +   + L+l ksl+Pk+v++ e+e
  evm.model.supercontig_6.108 408 RLRDFAKLLDLNFEFEP-ILSPIQELNEATFRVEPDEVLAVNFMLQLYNLLDETTAAVE---AALRLAKSLKPKIVTLGEHE 485
                                  *****************.799******************************99999999...9******************* PP

                         GRAS 246 adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkp 326
                                  a++n+  F+ rf +al++y+a+f+sle +l r+s er  vEr llgr+i+ v+  e+ e rrer+e +e+Wr  +e++GF +
  evm.model.supercontig_6.108 486 ASLNRVGFASRFNNALRFYAAVFESLEPNLTRDSPERLQVERLLLGRRISGVIGREEPEtRRERMEDKEQWRVLMESCGFDS 567
                                  *******************************************************99998********************** PP

                         GRAS 327 vplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                                  vpls++a++qak ll +++ s  y++ +++  ++ l W++ pL++vS+Wr
  evm.model.supercontig_6.108 568 VPLSHYAMSQAKILLWNYNySPLYSLIDSEPGFLsLAWNEVPLLTVSSWR 617
                                  *******************9999*99887777766**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.35223595IPR005202Transcription factor GRAS
PfamPF035144.1E-110251617IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIK QKQQQEQQQQ QHNQQQQLLG LNPFSLNPWP SSATHHPMSN  60
ASNLGYSLSG PGFADPFQVA GGGDAGESGF QFPHIEHHST GFRFSDFGGG AGGEFDSDEW  120
MDSLMGGGDS TDSSNLPSGC EPWQHSSDFS LYGPDPFVTG PSRLGVACSP PSDLNPVIFT  180
ETQKSPAATL QQPQVTAWAP SPPQLPSPQP LQALLKDTKT TNSQTLNLLK NDPVGVSSSS  240
PEPVSSPPLF KALLDCARLA ESEPDRAVKS LICLRESVSD QGNPTERVGF YFTEALHSRL  300
SLQAEKSLTI VETSCEDFTL SYKALNDACP YAKFAHLTAN QAILEATETA SMIHIVDFGI  360
VQGVQWAALL QALATRTAGK PARIRISGIP APALGKSPGS SLLATGNRLR DFAKLLDLNF  420
EFEPILSPIQ ELNEATFRVE PDEVLAVNFM LQLYNLLDET TAAVEAALRL AKSLKPKIVT  480
LGEHEASLNR VGFASRFNNA LRFYAAVFES LEPNLTRDSP ERLQVERLLL GRRISGVIGR  540
EEPETRRERM EDKEQWRVLM ESCGFDSVPL SHYAMSQAKI LLWNYNYSPL YSLIDSEPGF  600
LSLAWNEVPL LTVSSWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1492466171375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_6.108
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021908058.10.0scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A067KR640.0A0A067KR64_JATCU; GRAS22 protein
STRINGevm.model.supercontig_6.1080.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Representative plantOGRP67991519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein