PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_6.10
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB_related
Protein Properties Length: 290aa    MW: 31663.6 Da    PI: 10.5156
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_6.10genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285.3e-09533129
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIar 29
                                +++WT+eE+  l+ +v ++G+g W+tI +
  evm.model.supercontig_6.10  5 KQKWTAEEEAALKAGVLKHGTGKWRTILS 33
                                79*************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.45157IPR017930Myb domain
SuperFamilySSF466898.97E-11257IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-9452IPR009057Homeodomain-like
PfamPF002494.6E-6532IPR001005SANT/Myb domain
CDDcd116607.52E-12653No hitNo description
SMARTSM005262.7E-13112177IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467854.73E-16113191IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.6E-14114184IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150422.565114182IPR005818Linker histone H1/H5, domain H15
PfamPF005381.5E-10116175IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV LKHGTGKWRT ILSDPVFSAT LQSRSNDKWR NINVTAIWGS  60
RKKAKLALKR IPIPKQDENA MTLINVSHNA EEIVDAKPLA ISSGTSRADG LKKPIPSLDN  120
LVLDAITNLK ELRGSDRASI FEYIEEHYRT PTNIKRLVAT KLKHLTANGT LIKIKHKYRI  180
APSSAIAGVK KKSPPLVFEG RQKDSLKQEK SINILTKSQI DGELLKIKGM TAQEAAAAAA  240
RAVAEAEVAI AEAEEAAREA EKAEAEAEAA QIFAKAAFKA LKYKTLRTW*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00626PBMTransfer from PK06103.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_6.10
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ8870380.0FJ887038.2 Carica papaya MYB mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021908090.11e-175telomere repeat-binding factor 2
RefseqXP_021908091.11e-175telomere repeat-binding factor 2
RefseqXP_021908092.11e-175telomere repeat-binding factor 2
SwissprotQ9FJW54e-92TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLC3VPG81e-171C3VPG8_CARPA; MYB
STRINGevm.model.supercontig_6.100.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38092759
Representative plantOGRP8551659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.27e-88MYB_related family protein
Publications ? help Back to Top
  1. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]