PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_58.61
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family CPP
Protein Properties Length: 478aa    MW: 52054.5 Da    PI: 6.425
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_58.61genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR29.11.9e-093613851640
                          TCR  16 kYCeCfaagkkCseeCkCedCkNke 40 
                                   YCeCfaag++C e C+C dC+Nk 
  evm.model.supercontig_58.61 361 SYCECFAAGVYCIEPCSCLDCFNKP 385
                                  6**********************96 PP
2TCR51.32.3e-16432470139
                          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                                  ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  evm.model.supercontig_58.61 432 RHKRGCNCKKSSCLKKYCECYQGGVGCSINCRCEGCKNA 470
                                  589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.3E-4351387IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163431.568352472IPR005172CRC domain
PfamPF036382.7E-6361384IPR005172CRC domain
SMARTSM011142.9E-17432473IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.6E-12434470IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MRARPDSSSS SSLQMDTPEK IQIANPLSKF EVIGSSTLSN IMDSPVFNYI NNLSPIKPVK  60
SVHITQTFNS LTFASLPSVF TSPHVISHKE SRFFTRHISS DPPKPEFSSQ HHTKLGKNEA  120
VEDAGQLYDN SADLPKNFDP GVSIGEASTE APNEQSKFAI ELPRTLKYDC GSPDCDTIPC  180
VLETNNGKPH SNGASVSLVP FVRLDSEKVE ATNEATGCDW ESLISDAADL LIFSSPNDSE  240
AFKGLIQKPL DPDVKFSSLR SQVPQTMLTS VVVSSSSEPQ NEPSRTAEAS KLGDKVLENI  300
GNTCMNKCLH SNLTGQVNNE LTTSIPFPCE TVSNLHRGMR RRCLDFEMLA ARRKNFGDGS  360
SYCECFAAGV YCIEPCSCLD CFNKPIHEDT VLATRKQIES RNPLAFAPKV IRSSDSLPET  420
GDDSSKTPAS ARHKRGCNCK KSSCLKKYCE CYQGGVGCSI NCRCEGCKNA FGRKDGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A9e-1238746949120Protein lin-54 homolog
5fd3_B9e-1238746949120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_58.61
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021897055.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A2N9F5081e-135A0A2N9F508_FAGSY; Uncharacterized protein
STRINGevm.model.supercontig_58.610.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14672891
Representative plantOGRP9931755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.13e-74TESMIN/TSO1-like CXC 2