 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
evm.model.supercontig_57.85 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
| Family |
bHLH |
| Protein Properties |
Length: 397aa MW: 45150 Da PI: 6.516 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_57.85 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 42.6 | 1.1e-13 | 205 | 256 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+
evm.model.supercontig_57.85 205 QRMTHIAVERNRRRQMNDHLNSLRSLMPPS---YIQRGDQASIIGGAIDFVKELE 256
79****************************...9******************995 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 397 aa
Download sequence Send
to blast |
MERLQGPINS CFLEEHLDVE FLEQGFVNQE NWRLEEEEEL HLSIPSLEDK MPFLQMLQSV 60
ESSSFLPFKE PNFQTLLRLQ HVKKPWELNP TLPDMDTQIQ ALEFESCVTH EIVDLDLPSP 120
VKSETKDIQN PHSTSYVEGV SSVSNTNSGE NYPREGNSGS SPPLTHPQIK PRDTHFPKST 180
PPITRERKKR KRTKTTKNKE EVESQRMTHI AVERNRRRQM NDHLNSLRSL MPPSYIQRGD 240
QASIIGGAID FVKELEQLLQ SLETQKRMRK GEGSTDNSVC NSMTGISSNG LVVSRTQSGE 300
EVKAENKSET ADIEVTVIQN HVNMKIQCPR RHGQLLKAIV SLENLRLTVL HLNITTSQSR 360
VHYSFNLKME EECKLGSADE IASAVHQIFR YIIKGS*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 186 | 191 | RKKRKR |
| 2 | 187 | 192 | KKRKRT |
| 3 | 205 | 216 | RMTHIAVERNRR |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Yu H,Murchie EH,González-Carranza ZH,Pyke KA,Roberts JA
Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.
J. Exp. Bot., 2015. 66(5): p. 1543-52
[PMID:25582452]
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