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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
evm.model.supercontig_57.71 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
| Family |
B3 |
| Protein Properties |
Length: 331aa MW: 37495.8 Da PI: 8.8172 |
| Description |
B3 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_57.71 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 101.4 | 5.3e-32 | 34 | 138 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78
f+kv tpsdv+k++rlv+pk++ae++ +++e++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD
evm.model.supercontig_57.71 34 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldASSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGD 115
89****************************66667899******************************************** PP
EEEEEE-.SS.SEE..EEEEE-S CS
B3 79 fvvFkld.gr.sefelvvkvfrk 99
+v F++ g+ + +l++ ++r+
evm.model.supercontig_57.71 116 IVSFQRGvGElGKDRLYIDWRRR 138
*****666999999999999997 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 331 aa
Download sequence Send
to blast |
MDLSLASHEE SAGASGGAGT STDIHHAIEK EHMFDKVVTP SDVGKLNRLV IPKQHAEKYF 60
PLDASSNEKG LLLNFEDRNG KPWRFRYSYW NSSQSYVMTK GWSRFVKEKK LDAGDIVSFQ 120
RGVGELGKDR LYIDWRRRPD AADPTSLAHN QFQNPLSFPQ IFRWGRLYSM TPQSHLPLRP 180
NYDHLQRLNY GIYPYHHHHH HHHHHQHDQS QYQQQQQQQQ IVGYGNIRPS EPHQIAGLPH 240
MVFDSVPVVH GSKTAGKRLR LFGVNMECPQ EDDQSSITMP RGSLGSALSS HTPSSSLPSP 300
QFRLPPTGSA PFSTDYSDKG KSSLSFDLEL *
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5os9_A | 1e-66 | 29 | 142 | 3 | 117 | B3 domain-containing transcription factor NGA1 |
| 5os9_B | 1e-66 | 29 | 142 | 3 | 117 | B3 domain-containing transcription factor NGA1 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Regulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}. |
| UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Lee BH, et al.
The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
Plant Mol. Biol., 2015. 89(4-5): p. 529-38
[PMID:26433582] - Lozano-Sotomayor P, et al.
Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
Plant J., 2016. 88(3): p. 437-451
[PMID:27402171] - Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
Active suppression of a leaf meristem orchestrates determinate leaf growth.
Elife, 2017.
[PMID:27710768] - Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
FEBS J., 2018. 285(21): p. 4041-4059
[PMID:30183137] - Sato H, et al.
Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
[PMID:30397148]
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