PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_57.28
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 497aa    MW: 55940.2 Da    PI: 9.5957
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_57.28genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.51.3e-14344390455
                                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   hn  Er+RRd+ N+++  L+el+P++      K++Ka++L +A+eY+k Lq
  evm.model.supercontig_57.28 344 VHNLSERKRRDKFNKKMRALQELIPNC-----NKVDKAAMLDEAIEYMKTLQ 390
                                  6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-19338409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.374340389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-12343390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-19344398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.41E-14345394No hitNo description
SMARTSM003533.5E-16346395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0010017Biological Processred or far-red light signaling pathway
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MIRSNDDYEE LIWEDGRVRM RGLSRKSSVQ KTPSFLGYSY QSSKAQEQRG EDTSAPKRVR  60
FEAAPDHINK YPLLRQSILD RRKLGGDNDE KMMESSPSYY PKSAAAFFYE HKRSKNVNDP  120
QTVPVNEYGN LEAAEPFTNT NCLPTVPDTD NILIIPQALD PRLDSSRSQK QYSITGKASE  180
RRNFSMFLTP QVLGKPNCSW RHLSSGVQEM QRNCSKSIKN VELNQPNYSN RAQIERTEMM  240
VPGDEQSAAV ETHRTQIHDS LRVNRNKRKH SDETIGEVPV ASNSVRSRGA SNDSTYILKR  300
SYHQINDEAG YLSENEKEEG EDTMKPVLAR RPKPVPKKSG TAQVHNLSER KRRDKFNKKM  360
RALQELIPNC NKVDKAAMLD EAIEYMKTLQ LQLQMMWMGS GYNYMSPMML PAVNGSLMMS  420
HWEMMRMQMA AAAPAITSPI PGVFPAAYMQ SLVLPGTLSA PAAALQLSSS AHLSGASRDS  480
MPNTNPYSIN YKAAHS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1348353ERKRRD
2349354RKRRDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_57.28
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021897247.10.0transcription factor PIL1-like
STRINGevm.model.supercontig_57.280.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16436813
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46970.11e-38phytochrome interacting factor 3-like 1