PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_55.64
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 321aa    MW: 35946.8 Da    PI: 7.3259
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_55.64genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.5e-13110161155
                                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                  +r++h ++Er+RR+++N+ ++ Lr+++P +     ++ + a+i+  A++++k+L+
  evm.model.supercontig_55.64 110 QRMTHIAVERNRRRQMNEYLAVLRSMMPAS---FVQRGDQASIVGGAINFVKELE 161
                                  79***************************9...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.33E-12108165No hitNo description
SuperFamilySSF474591.27E-15108174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-13109165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.875109160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-10110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MALEAVVFHH DPTYSYGGSR DLYSIAGGFC YPGGLDRKDE KPLCGENHNI LMKEFHWEAP  60
TFSSSPENNS AGRDGFQQLG PEEVLASATR CRRKRRRAKN VKNEEQVENQ RMTHIAVERN  120
RRRQMNEYLA VLRSMMPASF VQRGDQASIV GGAINFVKEL EQLLQSLEGH EKMTEFHQAS  180
EININGGFSS SLFSDFFAFP QFSTSSSNPN KINNSSVSLS KSTAEKQLAI ADVEVTMVET  240
HVNLKILSRR QPKQLLKMIA RLPSLGLTIL HLNLTASQHM VLYSFSVKVE DDCQLGSVNE  300
IAAAVYEMVV RIQEEAKFIN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19296RKRRR
29299RKRRRAKN
3110121RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_55.64
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021897559.10.0transcription factor bHLH94-like isoform X2
RefseqXP_021897561.10.0transcription factor bHLH94-like isoform X2
TrEMBLA0A1U8AL431e-106A0A1U8AL43_NELNU; transcription factor bHLH94-like
STRINGevm.model.supercontig_55.640.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.18e-65bHLH family protein