PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_55.163
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family B3
Protein Properties Length: 474aa    MW: 53232.8 Da    PI: 6.5837
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_55.163genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.31.6e-19127217199
                                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                                   f k +++s+v +  ++ lp  f++ h    ++++t+tledesg++++ k+i +k++    l++GW++Fv+ ++L egD++v
  evm.model.supercontig_55.163 127 FAKSMVRSHVASCFWMGLPGLFCKLHLP--NKDTTITLEDESGNEYKTKYIADKTG----LSAGWRQFVSGHNLLEGDVLV 201
                                   889********************98853..46789***************888888....********************* PP

                                   EEE-SSSEE..EEEEE-S CS
                            B3  82 Fkldgrsefelvvkvfrk 99 
                                   F+l++ ++f  +v ++r+
  evm.model.supercontig_55.163 202 FQLVKPTKF--KVYIIRA 217
                                   **9986777..9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-21119218IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-24121218IPR015300DNA-binding pseudobarrel domain
CDDcd100173.21E-25125216No hitNo description
PfamPF023623.9E-17127217IPR003340B3 DNA binding domain
SMARTSM010191.1E-21127218IPR003340B3 DNA binding domain
PROSITE profilePS5086313.521127218IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MDLVLKKEVE DNNPEALSPA TDYPAPAVEA GLQHHLHLSL TPKPLTFSLR RKKKLSIDRK  60
CETLKIKKCL SETIVKHAVA GRGKKYKSCK KNGASVNGKC TYGEAKSPAM IRAEEVQSNL  120
ETDYPNFAKS MVRSHVASCF WMGLPGLFCK LHLPNKDTTI TLEDESGNEY KTKYIADKTG  180
LSAGWRQFVS GHNLLEGDVL VFQLVKPTKF KVYIIRANDF TEVDGALGLL NLDAPTKSEA  240
GKYLLLSKED KKSRPATTGS YIEHPAEQFE SDSEEVRSEV LEGFKLSVPG VQFNEVKSFE  300
DFNIVIDGMV IDSELSENIQ DKYYKLCCCQ NAFLHENLIQ GINYKLVVGI ICETVNIADS  360
LRACKFTTSR DEYAMWDRTL QAFELLGMNV GFLRVRLHRL VSLAYESEGS TDTRRYIEAK  420
TERACAEDEI RRLEAKLVEL KGDYESFGAK IECLKSSAES HELKFQEEVS SPW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14854LRRKKKL
24954RRKKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_55.163
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021897614.10.0LOW QUALITY PROTEIN: B3 domain-containing protein Os01g0234100-like
TrEMBLA0A061DGW80.0A0A061DGW8_THECC; AP2/B3-like transcriptional factor family protein isoform 4
STRINGevm.model.supercontig_55.1630.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM168371012
Representative plantOGRP7667818
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-37B3 family protein