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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
evm.model.supercontig_55.15 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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| Family |
AP2 |
| Protein Properties |
Length: 530aa MW: 58539.7 Da PI: 6.699 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_55.15 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 35.5 | 2.5e-11 | 240 | 296 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++gr++A+++d + rk + g ++ +e+Aa+a++ a++k++g
evm.model.supercontig_55.15 240 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEEKAARAYDLAALKYWG 296
57*******************4444.2344336655.779999**************98 PP
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| 2 | AP2 | 50.1 | 6.9e-16 | 339 | 390 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g
evm.model.supercontig_55.15 339 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 390
57****************988532...5************************998 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010080 | Biological Process | regulation of floral meristem growth |
| GO:0010492 | Biological Process | maintenance of shoot apical meristem identity |
| GO:0035265 | Biological Process | organ growth |
| GO:0048364 | Biological Process | root development |
| GO:0060772 | Biological Process | leaf phyllotactic patterning |
| GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 530 aa
Download sequence Send
to blast |
MAPATNWLSF SLSPMEMLRS SESQFVSYDT SSAASPHYLI DNFYANGWGN VPKPQVFFTE 60
QTTNQEKEAH QQAVIADSPI LTTFIDPQTH TQPKLEDFLG DSSSLVRYSD SQTETQDSSL 120
TQIYDHQTSA YFNDPQDLKA ITRFQAFSTN SGSEVDDSAS MGRTQLTGGE FTGHSIESSG 180
NELAFSSCPT GALSLGVNNT TANNHNANNQ LSSDNAKAIV SVDNSDGSKK IADTFGQRTS 240
IYRGVTRHRW TGRYEAHLWD NSCRREGQAR KGRQGGYDKE EKAARAYDLA ALKYWGPTAT 300
TNFPISNYGK ELEEMKLVTK QEFIASLRRK SSGFSRGASI YRGVTRHHQQ GRWQARIGRV 360
AGNKDLYLGT FATEEEAAEA YDIAAIKFRG LNAVTNFEMN RYDVEAIAKS ALPIGGAAKR 420
LKLSLETEQK PIISHPVQPQ PQCSSTGNIN FASSIHPPFS TIPCGIPFDT TLYPHHNLFH 480
HYQTTNIPTT HAPLPISDSS VSTSTMPTPM TLLPQQPAEF FIWPPHQSY*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Publications
? help Back to Top |
- Krizek BA
Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
BMC Res Notes, 2015. 8: p. 556
[PMID:26459062] - Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
Plant Physiol., 2016. 170(1): p. 283-93
[PMID:26537561] - Krizek BA, et al.
RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
Plant Physiol., 2016. 171(3): p. 2069-84
[PMID:27208279] - Du Y,Scheres B
PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
[PMID:29078398]
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