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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_55.116 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | AP2 | ||||||||
Protein Properties | Length: 508aa MW: 56242.8 Da PI: 7.0164 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.5e-17 | 164 | 213 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g evm.model.supercontig_55.116 164 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 213 78*******************......55************************997 PP | |||||||
2 | AP2 | 43.8 | 6.4e-14 | 256 | 306 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g evm.model.supercontig_55.116 256 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 306 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.9E-9 | 164 | 213 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-15 | 164 | 222 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.7E-17 | 165 | 221 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.5E-32 | 165 | 227 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.96E-11 | 165 | 220 | No hit | No description |
PROSITE profile | PS51032 | 17.701 | 165 | 221 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-9 | 256 | 306 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.60E-25 | 256 | 316 | No hit | No description |
SuperFamily | SSF54171 | 5.89E-17 | 256 | 316 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-16 | 257 | 314 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.2E-31 | 257 | 320 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.461 | 257 | 314 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-6 | 258 | 269 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-6 | 296 | 316 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 508 aa Download sequence Send to blast |
MWDLNDSPGQ TRDDESEEAC SSQKTSIDGD DDKGKRVGSV SNSSSSAVVV EDGSDDEDGS 60 KMMVAKKRSG RIFGFSVPQE EYLEGDPPVT RQFFPVDDPE MGVSSCGVVG GGSGGGVIGG 120 PGFPRAHWVG VKFCQSDPRR PSGKSMEVSQ PMKKSRRGPR SRSSQYRGVT FYRRTGRWES 180 HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVEADINF SIEDYEEDLK QMSNLTKEEF 240 VHVLRRQSTG FPRGSSKYRG VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE IEAARAYDKA 300 AIKCNGKEAV TNFDPSIYEN ELNAESSGDA ADHNLDLSLG NSASNKQHSG IDHHHHHRLE 360 ADWRNQAFSS KEACRGEGEP QNGYSEAETM QLLSQTHLQS PANSFKSSSE LQRYGQFRRP 420 GDMFQILPPY INPPNYQIQF PSSSHGGRVG SDLALSTSDN HHQWQSGQHH QQLFASAAAS 480 SGFPQQIRNP QNWLQKNGFQ SSLMRPS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_55.116 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021897522.1 | 0.0 | floral homeotic protein APETALA 2 isoform X2 | ||||
Swissprot | P47927 | 1e-144 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | F6H4H7 | 0.0 | F6H4H7_VITVI; Uncharacterized protein | ||||
STRING | evm.model.supercontig_55.116 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2297 | 28 | 75 | Representative plant | OGRP497 | 17 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-127 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_55.116 |