PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_54.67

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

M-type_MADS

Protein Properties

Length: 202aa MW: 22769.8 Da PI: 9.7539

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_54.67	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	54.9	1.1e-17	5	50	4	49
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +n+sn qvtfsk r ++KKA+ELS+LC+a++a+i+fs k++ + evm.model.supercontig_54.67 5 NNQSNLQVTFSKCRVRLFKKASELSTLCGADIAIIVFSLGRKVFSF 50 79************************************88887766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	17.927	1	54	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.5E-14	1	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.05E-17	3	71	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.1E-19	4	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-6	16	31	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-6	31	52	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MVKMNNQSNL QVTFSKCRVR LFKKASELST LCGADIAIIV FSLGRKVFSF GYPSIETLVE 60 CFISCNPPQV VSGTEKLIEA HRTLTRSKDL NQTKNANENE CWWMGPKEDL SLAQLQQLKA 120 SLYELKKIVA QHAEKIVIHT LIFVFLILIL IIIINLIILF FLGSSSSRAS LPYEIRPARF 180 RSSVVPFNNP NMMPPGYHGF F*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_54.67

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021897680.1	3e-95	agamous-like MADS-box protein AGL62
TrEMBL	A0A067EEZ4	5e-54	A0A067EEZ4_CITSI; Uncharacterized protein
STRING	evm.model.supercontig_54.67	1e-147	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390
Representative plant	OGRP16	17	761

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	2e-27	AGAMOUS-like 62

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_54.67