 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
evm.model.supercontig_53.88 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
Family |
ARF |
Protein Properties |
Length: 698aa MW: 76937.5 Da PI: 6.7407 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm.model.supercontig_53.88 | genome | ASGPB | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 74.1 | 1.7e-23 | 121 | 222 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75
f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g++W++++iyr++++r++lt+GW++Fv++++L
evm.model.supercontig_53.88 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldynAEPPVQ--TILAKDVHGEVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLV 200
89****************************985444444..8999************************************* PP
TT-EEEEEE-SSSEE..EEEEE-S CS
B3 76 egDfvvFkldgrsefelvvkvfrk 99
+gD++vF + +++ l+v+++r+
evm.model.supercontig_53.88 201 AGDSIVFF--RAENGDLRVGIRRA 222
********..3488889****996 PP
|
2 | Auxin_resp | 113.9 | 1.5e-37 | 283 | 366 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrs 81
aa+ a+++++FevvY+Prast+eF+vk++ v++a+++++++Gm+fkmafetedss++++ +G v++v+ +dp++WpnS+Wr+
evm.model.supercontig_53.88 283 AATLAAKGQPFEVVYYPRASTPEFCVKASAVRAAMQIQWCPGMKFKMAFETEDSSRISWfMGAVASVQVVDPINWPNSPWRL 364
68899****************************************************************************9 PP
Auxin_resp 82 Lk 83
L+
evm.model.supercontig_53.88 365 LE 366
96 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 698 aa
Download sequence Send
to blast |
MDSIKDPMRK NSENLLDPQL WHACAGSMVQ IPPLNSKVFY FPQGHSENAH GIVDLRHVRI 60 PPLILCRVSA IKYMADTETD EVYAKIRLVP LRETGFGYIG DDHDVFDGST GVDSSDKPVS 120 FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYNAEPPVQT ILAKDVHGEV WKFRHIYRGT 180 PRRHLLTTGW SNFVNQKKLV AGDSIVFFRA ENGDLRVGIR RAKRGTGNGL EYSSGWNPVG 240 GNCSSSSGGY SGFSREDESK LMRRNCSDGD LRGRVRAESV VEAATLAAKG QPFEVVYYPR 300 ASTPEFCVKA SAVRAAMQIQ WCPGMKFKMA FETEDSSRIS WFMGAVASVQ VVDPINWPNS 360 PWRLLEVTWD EPDLLQNVKR VSPWLVELVT NIPTLHLSPF SPPRKKMRVP QHPDFSLLTQ 420 VPVPSFSSNT LRSSSPLSCI SDMIPAGIQG ARHAQYGSSF SDLYFNNLQP GLFPVDFQQQ 480 QQQQQQQQLD HAAPPSRSIN GNSVRTSKIN ESLSCSLTIG NPTSSLKENS EVKTPHFFLF 540 GKLILTQPQN CESSSGDTMG NGSLDGNLEK TTISSDGSGS ATNQIGTQEN SSDEGSPWCK 600 DDQKTDVGFE ADHCKVFMKS DDVGRNLDLS VLSSYQELYG KLANMYGMEN SEMVGAVLYR 660 DAAGCLRQTG NEPFSVFLKT ARKLMIVPDS SSDNVGR*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Publications
? help Back to Top |
- Yang ZB, et al.
TAA1-regulated local auxin biosynthesis in the root-apex transition zone mediates the aluminum-induced inhibition of root growth in Arabidopsis. Plant Cell, 2014. 26(7): p. 2889-904 [PMID:25052716] - Bennett T,van den Toorn A,Willemsen V,Scheres B
Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342] - Zhang GZ, et al.
Ectopic expression of UGT75D1, a glycosyltransferase preferring indole-3-butyric acid, modulates cotyledon development and stress tolerance in seed germination of Arabidopsis thaliana. Plant Mol. Biol., 2016. 90(1-2): p. 77-93 [PMID:26496910] - Ye Y, et al.
Germostatin resistance locus 1 encodes a PHD finger protein involved in auxin-mediated seed dormancy and germination. Plant J., 2016. 85(1): p. 3-15 [PMID:26611158] - Liu Z, et al.
Repression of callus initiation by the miRNA-directed interaction of auxin-cytokinin in Arabidopsis thaliana. Plant J., 2016. 87(4): p. 391-402 [PMID:27189514] - Wójcikowska B,Gaj MD
Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis. Plant Cell Rep., 2017. 36(6): p. 843-858 [PMID:28255787] - Wójcik AM,Nodine MD,Gaj MD
miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis. Front Plant Sci, 2017. 8: p. 2024 [PMID:29321785] - Lin JS, et al.
MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis. Front Plant Sci, 2018. 9: p. 68 [PMID:29449855]
|