PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

bHLH

Protein Properties

Length: 335aa MW: 35400.4 Da PI: 7.8037

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_52.97	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.9	1e-09	157	201	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR++i +++ L+el+P+ + K + a++L + v+Y+k L evm.model.supercontig_52.97 157 HSIAERLRREKIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 201 99*********************55......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.04E-11	150	206	No hit	No description
SuperFamily	SSF47459	4.06E-15	150	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.132	152	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.1E-15	154	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.2E-7	157	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.2E-11	158	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0031347	Biological Process	regulation of defense response
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MASNNPNEAA SDDFLEQILG LPNFASADTG LTGHDGGLGG TAASVPPMML QLSSSDGSAH 60 MTALTAGSGG AGAAAGFHTP VFPLGLSLEQ GKGGFLKPED ASGSGKRFRD DVVDGRGSSV 120 KNVFHGQPMP TTVPAAPHPP VMRPRVRARR GQATDPHSIA ERLRREKIAE RIRALQELVP 180 SVNKTDRAAM LDEIVDYVKF LRLQVKVLSM SRLGGAGAVA PLVTDIPLSS VEVIDYKNIK 240 MAVSPVIIRK LSLLFVKQDE TGEGGRSQPA WEKWSNDGTE RQVAKLMEEN VGAAMQFLQS 300 KALCIMPISL ATAIYHAQPP DTSSLVKPEA NPPP*

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_52.97

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021898024.1	0.0	transcription factor UNE12 isoform X1
Swissprot	O22768	1e-138	UNE12_ARATH; Transcription factor UNE12
TrEMBL	A0A2I4DYZ2	1e-164	A0A2I4DYZ2_JUGRE; transcription factor UNE12-like
STRING	evm.model.supercontig_52.97	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1611	28	88
Representative plant	OGRP58	16	313

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.2	1e-124	bHLH family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_52.97

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]