PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_52.7
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 317aa    MW: 34938 Da    PI: 5.0406
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_52.7genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.90.0002213257555
                                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                  ++ +r+RR ri +++  Lr ll ++        s  +++  ++ +Ik Lq
  evm.model.supercontig_52.7 213 TSATDRQRRLRIADKLKALRGLLQNS------EGSQTSVVDDVIGHIKFLQ 257
                                 56889******************997......4566777777777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.03E-7205267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-5205262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00148218261No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEGESGQENP LQLRSLTFAG NSNYGSYGSG DDQNQLFPMS DGVIESQPDT LSLSQWLHCS  60
KTPCSYVEFL TGNSGYLENA PIADLMESVA LPGGGIDAVE RVSEVQRGLL NNDLEKVFAP  120
RDNDSSSDMD AWKLKQCTCM LNSNFHEASV SFLKLQDGGS IYSKFQTYAQ NQTFGTQEPS  180
GNDCNSFHFR SKYGVQTSGF LSKPRNRRPR QGTSATDRQR RLRIADKLKA LRGLLQNSEG  240
SQTSVVDDVI GHIKFLQLQI KGYGHYILHE KTMNGPLEDL MGNLLEMNPS EATQLLESRG  300
LYIMPISFAE GFCQAA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209220RQGTSATDRQRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_52.7
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021897939.10.0transcription factor bHLH66
RefseqXP_021897940.10.0transcription factor bHLH66
STRINGevm.model.supercontig_52.70.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129561621
Representative plantOGRP1252844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.12e-10LJRHL1-like 2