PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_52.143
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family WRKY
Protein Properties Length: 350aa    MW: 39171.3 Da    PI: 10.2523
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_52.143genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.26.1e-32283341360
                                   -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
                          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                                   D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+k
  evm.model.supercontig_52.143 283 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHPK 341
                                   99***********************9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.3E-17234279IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.8E-34269341IPR003657WRKY domain
PROSITE profilePS5081130.572276342IPR003657WRKY domain
SuperFamilySSF1182901.16E-27279341IPR003657WRKY domain
SMARTSM007742.1E-39281341IPR003657WRKY domain
PfamPF031061.2E-27283340IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEEVEEANKV AVESCHRVLN LLSRPQDQVH YKNLMAETGE AVCKFKKVVS LLNTGLGHAR  60
VRKLKKPQTP FPQRIFLENP QHRTNQPSKT PHFLQSSYHE SLIQESSSSH AKNSLCLGSP  120
SFELSSSGKN PLQLAQPTPS GQYHFLHQQH KQLQQRLLQH QQQQLKNQAE MMFRKNNSGI  180
NLNFDSSSCT PTMSSTRSFI SSLSVDGSVA NLDGSAFHLI GAPRSSDQNS QQHKRKCSGR  240
GEDGSVKCGS SSRCHCSKKR KHRVKRSIKV PAISNKLADI PPDDYSWRKY GQKPIKGSPH  300
PRGYYKCSSM RGCPARKHVE RCLEDPSMLI VTYEGEHNHP KLPSQSANT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20274343775WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_52.143
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898029.10.0probable WRKY transcription factor 21
RefseqXP_021898030.10.0probable WRKY transcription factor 21
SwissprotO043361e-134WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLB9S4T80.0B9S4T8_RICCO; WRKY transcription factor, putative
STRINGevm.model.supercontig_52.1430.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35672861
Representative plantOGRP18171541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.15e-85WRKY DNA-binding protein 39