PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_52.116
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family HSF
Protein Properties Length: 370aa    MW: 42172.9 Da    PI: 9.1654
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_52.116genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.75.1e-35461372102
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k++++++d++++ ++sw++ g+sfvv+d+ +f++++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+
  evm.model.supercontig_52.116  46 FLTKTFDMVDDPNTNYMVSWNRGGTSFVVWDPYSFSTNLLPRYFKHNNFSSFVRQLNTYGFRKIDPDK---------WEFA 117
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkks 102
                                   ++ F +g+++ l++ikr+k 
  evm.model.supercontig_52.116 118 NEGFLRGQRHILKNIKRRKA 137
                                   *****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.45E-3441135IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.9E-3842135IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-5942135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-194669IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.5E-3146135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-198496IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434085109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-1997109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MNPLYPVKVE YSVSGLSQSG GGRGEPPVLP PPQPMEGLHD SGPPPFLTKT FDMVDDPNTN  60
YMVSWNRGGT SFVVWDPYSF STNLLPRYFK HNNFSSFVRQ LNTYGFRKID PDKWEFANEG  120
FLRGQRHILK NIKRRKAPAQ DGTVAVSSHQ SMGAFVEVGR FGLDKEIDRL RRDKQALMME  180
LVKLRQEQQN TRVYLQAMEE RLQGTEKKQQ QMMSFLARAM QNPAFLQQLV QHKEKRKELE  240
EAITKKRRRR AIERGQGVDV GECSSQRVLT SVKSEPQELG EFGFGVTELE ALALEMQGYG  300
RVXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXFE GELNIPSGNE DEDVNVLADR  360
LGYLGSSPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-254113515120Heat shock factor protein 1
5d5u_B2e-254113524129Heat shock factor protein 1
5d5v_B2e-254113524129Heat shock factor protein 1
5d5v_D2e-254113524129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128134LKNIKRR
2234249KRKELEEAITKKRRRR
3244249KKRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_52.116
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021897931.10.0heat stress transcription factor A-2b
SwissprotQ6VBB21e-117HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLA0A1U8NS091e-164A0A1U8NS09_GOSHI; heat stress transcription factor A-7a-like
STRINGevm.model.supercontig_52.1160.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-109heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S
    Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern.
    J. Plant Physiol., 2013. 170(14): p. 1277-84
    [PMID:23664583]