PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_51.67
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 228aa    MW: 26304.3 Da    PI: 6.675
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_51.67genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.1e-16550348
                                 SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
              Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                 +WT+eEd ll + v q+G g W++I+   g++R++k+c++rw++yl
  evm.model.supercontig_51.67  5 AWTKEEDYLLRKSVMQYGEGKWHLIPLLAGLNRCRKSCRLRWLNYL 50
                                 6*******************************************97 PP
2Myb_DNA-binding46.48.8e-1556101148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
              Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                  rg++ ++E ++++++++++G++ W++Ia++++ gRt++++k++w+ +l
  evm.model.supercontig_51.67  56 RGSFAEDEVDQIIELHRLFGNR-WSLIAARLP-GRTANDVKNYWNYHL 101
                                  78999*****************.*********.***********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.97150IPR017930Myb domain
SMARTSM007177.1E-13252IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-20557IPR009057Homeodomain-like
PfamPF002493.3E-14550IPR001005SANT/Myb domain
CDDcd001673.58E-10550No hitNo description
SuperFamilySSF466899.77E-27597IPR009057Homeodomain-like
PROSITE profilePS5129423.22951105IPR017930Myb domain
SMARTSM007174.3E-1555103IPR001005SANT/Myb domain
PfamPF002494.0E-1456101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2358104IPR009057Homeodomain-like
CDDcd001673.16E-1061101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGGAAWTKEE DYLLRKSVMQ YGEGKWHLIP LLAGLNRCRK SCRLRWLNYL RPNIKRGSFA  60
EDEVDQIIEL HRLFGNRWSL IAARLPGRTA NDVKNYWNYH LSRRFNSQDE NKHKQITRKN  120
TNIHAKPNSS TNSKSIREIS QVKQQDISTS TAPMEGSGQL VVEAECSDQQ LQADEDGTNG  180
GNQNFEAKNL CDEDFKIQDV RDDRIEGFSQ WDWDDWILGM DLWNGTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2241078110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_51.67
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898221.11e-170transcription factor MYB114-like isoform X1
RefseqXP_021898223.11e-170transcription factor MYB114-like isoform X1
SwissprotQ9FNV92e-51MY113_ARATH; Transcription factor MYB113
TrEMBLA0A061F2615e-70A0A061F261_THECC; Myb domain protein 113, putative
STRINGevm.model.supercontig_51.671e-169(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17352611
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-53myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]