 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
evm.model.supercontig_51.139 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
Family |
MYB |
Protein Properties |
Length: 293aa MW: 33355.2 Da PI: 6.678 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm.model.supercontig_51.139 | genome | ASGPB | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 48.7 | 1.7e-15 | 23 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd ll+ ++k+ G g+W+t +++ g+ R++k+c++rw +yl
evm.model.supercontig_51.139 23 KGPWTAEEDVLLATYIKREGEGRWRTLPSRAGLQRCGKSCRLRWMNYL 70
79********************************************97 PP
|
2 | Myb_DNA-binding | 45.5 | 1.7e-14 | 76 | 127 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqky 47
rgr ++E++l+++++++lG++ +W++Ia +++ gRt++++k++w+++
evm.model.supercontig_51.139 76 RGRIAPDEEDLIIRLHRLLGNRvikhslRWSLIAGRIP-GRTDNEIKNYWNTH 127
678889********************************.************97 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 293 aa
Download sequence Send
to blast |
MRKPSASSSS ASITRSTPEG IKKGPWTAEE DVLLATYIKR EGEGRWRTLP SRAGLQRCGK 60 SCRLRWMNYL RPSIKRGRIA PDEEDLIIRL HRLLGNRVIK HSLRWSLIAG RIPGRTDNEI 120 KNYWNTHISK KLISQGIDPR THKPFNLNPN PDSQQNPQPN SLKLHELPTT PIPKRVHDHD 180 QDRTDCDQFY NQQMIDGVLM ENHFDDFMVD PLSSSGHGYN NDDEDNIQNC NEDSFSAFLD 240 SLITNNENSF MNLQQQQPDG IASAENTFFH ANVREPEVES TIVALLGDEK TL*
|
Orthologous Group
? help Back to Top |
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Representative plant | OGRP5 | 17 | 1784 |