PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

MYB

Protein Properties

Length: 286aa MW: 32561.4 Da PI: 6.0504

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_51.138	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.1	7.2e-17	23	70	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell+ ++k+ G g+W+t +++ g+ R++k+c++rw +yl evm.model.supercontig_51.138 23 RGPWTAEEDELLATYIKREGEGRWRTLPSRAGLQRCGKSCRLRWMNYL 70 89********************************************97 PP
2	Myb_DNA-binding	45.5	1.7e-14	76	118	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rgr ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+ evm.model.supercontig_51.138 76 RGRIAPDEEDLIIRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWN 118 678889**************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.622	18	70	IPR017930	Myb domain
SuperFamily	SSF46689	1.39E-28	20	117	IPR009057	Homeodomain-like
SMART	SM00717	4.0E-12	22	72	IPR001005	SANT/Myb domain
Pfam	PF00249	9.1E-15	23	70	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.8E-22	24	77	IPR009057	Homeodomain-like
CDD	cd00167	7.12E-10	25	70	No hit	No description
PROSITE profile	PS51294	24.256	71	125	IPR017930	Myb domain
SMART	SM00717	7.0E-13	75	123	IPR001005	SANT/Myb domain
Pfam	PF00249	6.5E-13	77	118	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.7E-23	78	126	IPR009057	Homeodomain-like
CDD	cd00167	4.86E-10	81	118	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MRKPSASSSS ASITRKTPEG IKRGPWTAEE DELLATYIKR EGEGRWRTLP SRAGLQRCGK 60 SCRLRWMNYL RPSIKRGRIA PDEEDLIIRL HRLLGNRWSL IAGRIPGRTD NEIKNYWNIH 120 ISKKLISQGI DPRTHKPINL NPNPDSLQNP PPNSLNLHEL PATPIPRRVD DHDQDRLDCD 180 KFYNQQMIDG VLMENHFDGF MVDPLPSSGH GHNNNDEDYI QNSNEDTFSA FLDSLIINNE 240 NAFMNLEQQQ PAGNASAEDT FFHANIWEAE VESTMVSLLI DEKTL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-24	23	125	7	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_51.138

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021898173.1	0.0	transcription repressor MYB5-like
Swissprot	Q38850	1e-73	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	A0A067KXJ9	1e-100	A0A067KXJ9_JATCU; MYB family protein
TrEMBL	B9I5W5	1e-100	B9I5W5_POPTR; Uncharacterized protein
STRING	evm.model.supercontig_51.138	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	5e-75	myb domain protein 5

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_51.138

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]