PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_50.49
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 211aa    MW: 23772.9 Da    PI: 6.0623
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_50.49genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000243759123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                 y+C  C++ F++   L  H++ H
  evm.model.supercontig_50.49 37 YECVFCKRGFTTAQALGGHMNIH 59
                                 99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.6E-43563IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.35E-63564No hitNo description
PROSITE profilePS5015710.993764IPR007087Zinc finger, C2H2
PROSITE patternPS0002803959IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MESNQQDPAD SKSSSCKEET DQIRSENDHD MVAGRSYECV FCKRGFTTAQ ALGGHMNIHR  60
KDRAKTSSRP SSMIVPNSVS AGSKVDHDDD DDRHNLFPNL IHRCPVSDHD LQFFPHVNYQ  120
TFFPAPSWKP PYTLNSGDVY VPILNQFHLK KFEDDDHGDC WRGALSLGVG SSPHVDGHGR  180
GHDREKRERG SDGEDDELDL ELRLGHHDHR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_50.49
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898315.11e-156uncharacterized protein LOC110815004
TrEMBLB9GS394e-39B9GS39_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_50.491e-155(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15373717
Representative plantOGRP19981133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.16e-13C2H2 family protein