PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_50.29
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 182aa    MW: 20101.4 Da    PI: 8.2221
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_50.29genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-192978355
                          AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                 y+GVr+++ +g+++AeIrd s    + +r++lg+f taeeAa+a+++a+ +++g
  evm.model.supercontig_50.29 29 YRGVRRRP-WGKFAAEIRDSSR---HgARVWLGTFNTAEEAARAYDKAAFAMRG 78
                                 9*******.**********432...25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.9E-322887IPR001471AP2/ERF domain
PROSITE profilePS5103223.7232886IPR001471AP2/ERF domain
PfamPF008473.5E-152878IPR001471AP2/ERF domain
SMARTSM003808.5E-362892IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-232987IPR016177DNA-binding domain
CDDcd000185.57E-312987No hitNo description
PRINTSPR003671.3E-112940IPR001471AP2/ERF domain
PRINTSPR003671.3E-115268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEQEDISENK KVIKGDGEGE MSKVMKVSYR GVRRRPWGKF AAEIRDSSRH GARVWLGTFN  60
TAEEAARAYD KAAFAMRGSS AFLNFPDPLF SHSRLVSSSS SSSSVSSTTR SLLPSVISSS  120
SSSSTMLSTE NIVNGNENNY CSNKKRRRVE EHGKQVLVFE CVDDKLLDEL LDIEDKPNNN  180
P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-282986360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-272986663ATERF1
3gcc_A1e-272986663ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144148KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_50.29
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898311.11e-131ethylene-responsive transcription factor ERF096-like
STRINGevm.model.supercontig_50.291e-131(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.13e-22ERF family protein