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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_5.77 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | HSF | ||||||||
Protein Properties | Length: 204aa MW: 21897.7 Da PI: 4.334 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 72.8 | 6.3e-23 | 132 | 190 | 2 | 60 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 Fl+k++++++d++l+++isw +g+sfvv+d+ efa+ Lp+ Fkh+nf+SFvRQLn+Y evm.model.supercontig_5.77 132 FLSKTFDLVNDPDLDRIISWGPSGESFVVWDPLEFARFTLPRNFKHNNFSSFVRQLNTY 190 9*********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 3.81E-23 | 127 | 190 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 5.7E-25 | 127 | 190 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.7E-19 | 128 | 199 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.6E-12 | 132 | 155 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.3E-19 | 132 | 190 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.6E-12 | 170 | 182 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.6E-12 | 183 | 195 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MNPEEEPASK SPHKSSASAT GTSVKPEMIP PSQPATVSSQ QFPFGSLFVE TAMGFSGSPL 60 SSPFSSPMME FEGLSAVHPQ QSPTSSSHMF EFEAIPVGET AQNLPLSSAE ETASFGVPQP 120 LECLQGNPVP PFLSKTFDLV NDPDLDRIIS WGPSGESFVV WDPLEFARFT LPRNFKHNNF 180 SSFVRQLNTY VGILPVLAGA ICM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 7e-19 | 129 | 190 | 17 | 78 | Heat shock factor protein 1 |
5d5u_B | 6e-19 | 129 | 190 | 26 | 87 | Heat shock factor protein 1 |
5d5v_B | 6e-19 | 129 | 190 | 26 | 87 | Heat shock factor protein 1 |
5d5v_D | 6e-19 | 129 | 190 | 26 | 87 | Heat shock factor protein 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_5.77 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021908643.1 | 1e-131 | heat stress transcription factor A-3 | ||||
TrEMBL | A0A067KYG2 | 7e-57 | A0A067KYG2_JATCU; Uncharacterized protein | ||||
STRING | evm.model.supercontig_5.77 | 1e-144 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22902 | 4 | 4 | Representative plant | OGRP96 | 17 | 233 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03720.1 | 2e-38 | heat shock transcription factor A3 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_5.77 |