PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

ERF

Protein Properties

Length: 177aa MW: 19827.2 Da PI: 4.8432

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_5.66	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.8	4.6e-17	17	67	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + ykGVr+ ++g+Wv+e r+p +k+ r+++g+f ++e+Aa+a++ a+++l+ge evm.model.supercontig_5.66 17 PVYKGVRR--RNGKWVCETREP---NKQSRIWVGTFSSPEMAARAHDVAALALRGE 67 68**85..47**8887...336************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	9.2E-13	17	67	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.388	18	75	IPR001471	AP2/ERF domain
SMART	SM00380	2.2E-23	18	81	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.5E-25	18	76	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.75E-16	18	77	IPR016177	DNA-binding domain
CDD	cd00018	5.34E-25	19	76	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MQKRKAGRKK FQETRHPVYK GVRRRNGKWV CETREPNKQS RIWVGTFSSP EMAARAHDVA 60 ALALRGESSA SLNFPDEIRA LPRAKSSAIR DIQCAAMEAA EVFRNTGDSS SAINVHGDDD 120 QEDEGMVFLD EDEVFNMPAI LHSMAEGLIL APPSVQRECT WDDDMEDEVE LALWSY*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269\|PubMed:17136305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_5.66

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269\|PubMed:17136305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX047553	0.0	JX047553.1 Carica papaya CBF/DREB1 transcription factor 1 (CBF1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021908755.1	1e-130	dehydration-responsive element-binding protein 1F-like
Swissprot	A2WZI4	3e-54	DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
Swissprot	Q8S9Z5	3e-54	DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBL	X2C082	1e-128	X2C082_CARPA; CBF/DREB1 transcription factor 1
STRING	evm.model.supercontig_5.66	1e-129	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM355	28	187
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25490.1	3e-42	C-repeat/DRE binding factor 1

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_5.66

Publications ? help Back to Top
Wang Q, et al. Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice. Plant Mol. Biol., 2008. 67(6): p. 589-602 [PMID:18470484] Liu HH,Wang YG,Wang SP,Li HJ Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses. Genet. Mol. Res., 2015. 14(1): p. 2331-40 [PMID:25867379]