PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_5.63
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GRF
Protein Properties Length: 397aa    MW: 43256.4 Da    PI: 8.2474
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_5.63genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC82.43.9e-26142185144
                         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                                 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e
  evm.model.supercontig_5.63 142 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVE 185
                                 79***************************************987 PP
2QLQ53.76.3e-1974110137
                         QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                                 s+F+ aQ+q+L+ Q+l+y+y++a++ vPpeLlq+i+k
  evm.model.supercontig_5.63  74 SYFSLAQWQELELQALIYRYMLAGAAVPPELLQPIKK 110
                                 79*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.2E-1174110IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.95775110IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.6E-1375108IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.686142186IPR014977WRC domain
PfamPF088792.4E-22143185IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MDLHLKQWRN QHESEQQPSA KIPKLLLDPH QQNPSASASA SLALPLFVPE QPSTKLTNLS  60
ALPDSSSRFP KMGSYFSLAQ WQELELQALI YRYMLAGAAV PPELLQPIKK SLLHSSPYFL  120
HHPLQHYAHY QPAWYWSRAA LDPEPGRCRR TDGKKWRCSR DVVAGQKYCE RHMHRGRNRS  180
RKPVEIPTPN TTAAVTPLSV AASTVSSLGA GGGGLGGSDT FKSTGPISMT LPAMVANGPS  240
FGLAGPASSA DLLHLNHSSS EFRIENKGLF EAQNEVDNRP DGHILRHFFD DWPRSLQEPD  300
NAGRNASPMS SSTCLTISSS DVSLKLSTGN ADELTTRDGE RDQLQLNWAA GWATNQMGGP  360
LAEALRSSTS NSSPTSVLHQ LPRNSATESS YVSTCV*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_5.63
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021908703.10.0growth-regulating factor 3 isoform X2
SwissprotQ8L8A71e-96GRF4_ARATH; Growth-regulating factor 4
TrEMBLA0A2I4DTW00.0A0A2I4DTW0_JUGRE; growth-regulating factor 3-like isoform X2
STRINGevm.model.supercontig_5.630.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19262667
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.14e-75growth-regulating factor 4
Publications ? help Back to Top
  1. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]