PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_49.48

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

Dof

Protein Properties

Length: 242aa MW: 27271.9 Da PI: 4.9802

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_49.48	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.8	4.3e-37	25	80	6	61
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC s+ntkfCyynnyslsqPry+CkaCrryWtkGG+lrnvPvGgg+rkn+++ evm.model.supercontig_49.48 25 PNCPRCSSSNTKFCYYNNYSLSQPRYLCKACRRYWTKGGSLRNVPVGGGCRKNRTR 80 68***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-25	20	78	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.183	25	79	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.5E-32	25	79	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	27	63	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MLRDSYNDQM FELYCSNGRA MEVAPNCPRC SSSNTKFCYY NNYSLSQPRY LCKACRRYWT 60 KGGSLRNVPV GGGCRKNRTR TKSRLPPNYG KPNEPFGTRK SSPSQHTGSE SNIDLAVVFA 120 RFLNDQNEAD RFVGQEANAG TYRSGCYPPE RLGPEETSLS DQIVGDGGDG KQGEEEERSL 180 FGLVNDELVI QSRSISDYNI WPEDDDAAIN MPSFSWQLQD FSLLHDHFNN DNWNSFDLSG 240 F*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_49.48

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021898538.1	0.0	dof zinc finger protein DOF1.2
Refseq	XP_021898539.1	0.0	dof zinc finger protein DOF1.2
STRING	evm.model.supercontig_49.48	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6462	26	43
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	4e-38	Dof family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_49.48