PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_49.31
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 256aa    MW: 28093.1 Da    PI: 8.4897
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_49.31genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.6e-08165205954
                                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                          HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  evm.model.supercontig_49.31 165 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 205
                                  699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-13157215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-14160216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-6166205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.04E-6179210No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEIDPLKSAA EGQMEMMMMT MMQMDKVSDF LGAYNDLAHE LPTTDLPGAT PTNNSINNML  60
HFADNPDHPA SPTNSFLNIP HSGIPVAGGS PVQDPSAPAF LSTGRWRETA GDLSGEENKR  120
NSMAAMREMI FRIAAMQPIH IDPESVKPPK RRNVKISKDP QSVAARHRRE RISERIRILQ  180
RLVPGGTKMD TASMLDEAIH YVKFLKTQVQ SLERAAANNR SPPGIGFPVP ISNAATYAPL  240
QLRKLCQPSQ HYGDA*
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_49.31
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898637.10.0transcription factor HEC2-like
SwissprotQ9SND46e-47HEC2_ARATH; Transcription factor HEC2
TrEMBLE0CPU47e-88E0CPU4_VITVI; Uncharacterized protein
STRINGevm.model.supercontig_49.310.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15592791
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.14e-43bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]