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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
evm.model.supercontig_49.122 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family |
ARF |
Protein Properties |
Length: 604aa MW: 66220.7 Da PI: 6.6689 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm.model.supercontig_49.122 | genome | ASGPB | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 78.9 | 5.4e-25 | 123 | 224 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74
f k+ltpsd+++ g +++p+ +a+++ +++ + tl+++d +g +We+++iyr++++r++lt+GW++Fv+ ++L
evm.model.supercontig_49.122 123 FAKILTPSDANNGGGFSVPRFCADSIfpvlnyqAEPPVQ--TLSVTDVHGAVWEFRHIYRGTPRRHLLTTGWSKFVNHKKL 201
89*********************999****985444444..9*************************************** PP
-TT-EEEEEE-SSSEE..EEEEE-S CS
B3 75 kegDfvvFkldgrsefelvvkvfrk 99
+gD+vvF+ ++s+++++++v+r+
evm.model.supercontig_49.122 202 IAGDSVVFM--KSSTGKMFIGVRRA 224
*********..669999*****996 PP
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2 | Auxin_resp | 92.4 | 7.7e-31 | 279 | 362 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWr 80
aa++a+ + +FevvY+Pra++s+F+vk+e ve+al+v + +GmR+kma+etedss+ ++ +Gtv++ + + W++S+Wr
evm.model.supercontig_49.122 279 AAERAALGRPFEVVYYPRAGWSDFIVKAEVVEAALSVFWVPGMRVKMAMETEDSSRLTWfQGTVSSSQVRERGPWSGSPWR 359
67889999************************************************************************* PP
Auxin_resp 81 sLk 83
+L+
evm.model.supercontig_49.122 360 MLQ 362
*97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009725 | Biological Process | response to hormone |
GO:0010208 | Biological Process | pollen wall assembly |
GO:0048830 | Biological Process | adventitious root development |
GO:0052543 | Biological Process | callose deposition in cell wall |
GO:0005634 | Cellular Component | nucleus |
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 604 aa
Download sequence Send
to blast |
MPPSLPPGDL RLVDPRIWRA CAGASVQIPL LRSRVYYFPQ GHLEQSCSSP ASILSPLALS 60 KPLIPCIIAA VHFFADPVTD EVFTRLLLHP VSPSQLSAHD SSANQQQQLG GRYDDEDDKI 120 VAFAKILTPS DANNGGGFSV PRFCADSIFP VLNYQAEPPV QTLSVTDVHG AVWEFRHIYR 180 GTPRRHLLTT GWSKFVNHKK LIAGDSVVFM KSSTGKMFIG VRRAVRFGNG SCDYARWRNQ 240 IGGGVDRVTG EETEGEGIGR EGFARSGRGR LTPEAVAEAA ERAALGRPFE VVYYPRAGWS 300 DFIVKAEVVE AALSVFWVPG MRVKMAMETE DSSRLTWFQG TVSSSQVRER GPWSGSPWRM 360 LQITWDEPEI LQSAKRVSPW QVEFLAPTPP LQTTFPPAKK LKFSQNSGFV SEGDSETFFP 420 TAGLNNSTMG QLKPSLLSYK TFPAGMQGAR QNNFGFFSLN NFMNENSSQT CTDNFFSNNM 480 VAKLKRVSTE LNIGSPQSDN LSPDSQSSFH SFVINSVGNR GCNSTKVGIS SFQLFGKVIH 540 MEEPIESGFD GVGCIEDDNT RGCSETGGVS NLVDLSLTYP YMELLDRLDA QCQRASAVEA 600 CSL*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4ldv_A | 7e-60 | 17 | 385 | 23 | 355 | Auxin response factor 1 |
4ldw_A | 7e-60 | 17 | 385 | 23 | 355 | Auxin response factor 1 |
4ldw_B | 7e-60 | 17 | 385 | 23 | 355 | Auxin response factor 1 |
4ldx_A | 7e-60 | 17 | 385 | 23 | 355 | Auxin response factor 1 |
4ldx_B | 7e-60 | 17 | 385 | 23 | 355 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Publications
? help Back to Top |
- Shi ZH, et al.
Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis. PLoS ONE, 2015. 10(3): p. e0117317 [PMID:25822980] - de Lucas M, et al.
Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation. Plant Cell, 2016. 28(10): p. 2616-2631 [PMID:27650334] - Wójcikowska B,Gaj MD
Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis. Plant Cell Rep., 2017. 36(6): p. 843-858 [PMID:28255787] - Wang B, et al.
Fine regulation of ARF17 for anther development and pollen formation. BMC Plant Biol., 2017. 17(1): p. 243 [PMID:29258431] - Wójcik AM,Nodine MD,Gaj MD
miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis. Front Plant Sci, 2017. 8: p. 2024 [PMID:29321785] - Lin JS, et al.
MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis. Front Plant Sci, 2018. 9: p. 68 [PMID:29449855]
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