PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_49.112
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bZIP
Protein Properties Length: 350aa    MW: 39481.4 Da    PI: 7.0275
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_49.112genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.83.2e-1063103340
                                   XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHH CS
                        bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLea 40 
                                    +k +rr+++NReAAr+sR+RKka++++Le+   k ++Le+
  evm.model.supercontig_49.112  63 NDKIQRRLAQNREAARKSRLRKKAYVQQLETsrlKLAQLEQ 103
                                   6899**************************83333444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.8E-561132IPR004827Basic-leucine zipper domain
PfamPF001703.6E-763102IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.19763107IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.51E-764107No hitNo description
CDDcd147086.81E-2165117No hitNo description
Gene3DG3DSA:1.20.5.1702.1E-766108No hitNo description
PROSITE patternPS0003606883IPR004827Basic-leucine zipper domain
PfamPF141441.1E-28151226IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGIYEPFHSM STWANNFKDN DSPNTGSSTV VQMDARLDNK SSEYVSPEPG EPSRNDHEAN  60
RANDKIQRRL AQNREAARKS RLRKKAYVQQ LETSRLKLAQ LEQELERARQ QGLYIGGISD  120
TNYLGMSATV NSGIAAFEME YVHWVDEQHR QISELRNALQ AHITDIELRI LVKSGLNHYS  180
NLFRMKADAA KVDVFYLISG MWRTSTERFF QWIGGFRPSE LLNVVTPQLE PLTDQQIVDI  240
CNLRQSSQQA EDALSQGVDK LQQTLAQCMA AEPGGTGNYG SQMAAAMENL EALEGFVNQA  300
DHLRQQTLQH MSRVLTIRQA ARGLLALGEY FHRLRALSSL WAARPREPA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269|PubMed:12953119}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00247DAPTransfer from AT1G77920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_49.112
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898560.10.0transcription factor TGA3
RefseqXP_021898562.10.0transcription factor TGA3
RefseqXP_021898563.10.0transcription factor TGA3
RefseqXP_021898564.10.0transcription factor TGA3
SwissprotQ93ZE21e-169TGA7_ARATH; Transcription factor TGA7
TrEMBLA0A061FFL90.0A0A061FFL9_THECC; BZIP transcription factor family protein
STRINGevm.model.supercontig_49.1120.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30612766
Representative plantOGRP26791132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77920.11e-150bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]