PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_489.6

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

bHLH

Protein Properties

Length: 307aa MW: 34690.2 Da PI: 5.5188

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_489.6	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22	2.9e-07	181	225	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++ r RR++i ++ ++L +l+P K++ ae+ + A +Y+k+Lq evm.model.supercontig_489.6 181 SIAARERRRKITEKTQKLAKLIPGgH------KMNTAEMFQAASKYVKYLQ 225 67889****************955......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.681	175	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.5E-10	178	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.56E-8	178	228	No hit	No description
SuperFamily	SSF47459	2.36E-10	179	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-8	181	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.5E-5	181	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MALSYCTTCW DSHQLLNSDM TTAMTSFQQF PFQDFQLPPD DLLASEYTHS SPSRLGSCNF 60 IDPFLPDDPF HYSHQSSFPP EILELDCSFQ YPKRQRTIHT NYYQPHIEQP SDLFNGYVPN 120 PSSVPLPEFY SLHEIQPPPP LMELQVPALP SVFDTGKVVS DEDDDQNVRK AGNGVSLSAQ 180 SIAARERRRK ITEKTQKLAK LIPGGHKMNT AEMFQAASKY VKYLQAQVGV LQLLSSLPQE 240 ELKPGKELQV LLSSPTIHEK LYWKEKCMVP GKLVEALADD HQIRTMHTIN DEIDKLLQNP 300 TCSSHD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_489.6

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021907490.1	1e-178	transcription factor bHLH52-like
STRING	evm.model.supercontig_489.6	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4547	25	52
Representative plant	OGRP5969	12	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30670.1	2e-32	bHLH family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_489.6