PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_489.5

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

bHLH

Protein Properties

Length: 225aa MW: 25033.3 Da PI: 5.5055

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_489.5	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.7	1.8e-07	160	204	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++ r RR++i ++ ++L +l+P K++ ae+ + A +Y+k+Lq evm.model.supercontig_489.5 160 SIAARERRRKITEKTQKLAKLIPGgH------KMNTAEMFQAASKYVKYLQ 204 67889****************955......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.681	154	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-10	157	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.82E-8	157	207	No hit	No description
SuperFamily	SSF47459	1.14E-10	158	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.6E-5	160	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-8	160	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MTGFQQVPFQ DFQLPPDDLL ASDCTHSSFS HLGSCNFIDP FLPDDPFHYS HQSSFPPEIL 60 ELECSFQYPK RQRTIHTNYY QPHVEQPSDF FNGYVPNPSS VPLPELFSLH ELPPPPPLMD 120 LQVPAVPSFF DTGKVVGGDD DDDDQNVKKA GNGVSLSAQS IAARERRRKI TEKTQKLAKL 180 IPGGHKMNTA EMFQAASKYV KYLQAQVGVL QLLSSLPQVT IMQA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_489.5

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021907490.1	1e-160	transcription factor bHLH52-like
TrEMBL	B9I0X7	1e-39	B9I0X7_POPTR; Uncharacterized protein
STRING	evm.model.supercontig_489.5	1e-164	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4547	25	52
Representative plant	OGRP5969	12	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30670.1	2e-19	bHLH family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_489.5