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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_48.75 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | C2H2 | ||||||||
Protein Properties | Length: 544aa MW: 58963.6 Da PI: 8.7104 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.1 | 1.6e-05 | 114 | 136 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H evm.model.supercontig_48.75 114 FVCEICNKGFQRDQNLQLHRRGH 136 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.57E-6 | 113 | 136 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 113 | 136 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.017 | 114 | 136 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 114 | 136 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 116 | 136 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 155 | 185 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.57E-6 | 185 | 210 | No hit | No description |
SMART | SM00355 | 160 | 190 | 210 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 544 aa Download sequence Send to blast |
MSSITAGDVG GGGGSFSSGN INGGSSSQEV VVLQQQEQQV PVVVLNHHHH HHHPHHLNSS 60 SSLASSTSNS NGSITQQQQK PPPPKKKRNL PGTPDPSAEV IALSPTTLMA TNRFVCEICN 120 KGFQRDQNLQ LHRRGHNLPW KLRQRTSSEI RKRVYVCPEP SCVHHNPARA LGDLTGIKKH 180 FCRKHGEKKW KCDKCSKKYA VHSDWKAHSK TCGTKEYKCD CGTIFSRRDS FITHRAFCDA 240 LAEENNKVNQ GLLMAANNNI AQAANQVIPE LNPTQSAKMA SGFSHQETKN NNALTMAMFS 300 SSSTSLFGNA RSLIPTSSSS SNCLQLNGIN SSSIFEGINC NNNGGLRGDL QLSGSASMSA 360 TALLQKAAQM GATSSGNTTV MNSNTGSCMD SPLMMQKSFV MTTMAAPPSF GCTQNNHQSQ 420 TLMAMNQTFN SNSNNMGMFN GVFDDQNDNK SSVLSRFSSG DGMTLDFLGI GGSRNSGRIN 480 NSSDNNNNNI LHDHQEHQEL IIEFGSGGIN GGHHHHHHET RIQSLNPFQQ HAAASMEKPM 540 WEV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-32 | 186 | 259 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 4e-32 | 186 | 259 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_48.75 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021898936.1 | 0.0 | protein indeterminate-domain 2-like isoform X2 | ||||
Swissprot | Q9SCQ6 | 1e-116 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | B9H586 | 1e-178 | B9H586_POPTR; C2H2 family protein | ||||
STRING | evm.model.supercontig_48.75 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19649 | 6 | 7 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-102 | indeterminate(ID)-domain 2 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_48.75 |
Publications ? help Back to Top | |||
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